KEGG   PATHWAY: cfa00020
Entry
cfa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Canis lupus familiaris (dog)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfa00020  Citrate cycle (TCA cycle)
cfa00020

Module
cfa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfa00020]
cfa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfa00020]
cfa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfa00020]
Other DBs
GO: 0006099
Organism
Canis lupus familiaris (dog) [GN:cfa]
Gene
474403  CS; citrate synthase, mitochondrial isoform X2 [KO:K01647] [EC:2.3.3.1]
607852  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
474487  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
481576  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
479043  IDH2; LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
478889  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
479066  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X3 [KO:K00030] [EC:1.1.1.41]
481081  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
477177  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
477748  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X2 [KO:K00164] [EC:1.2.4.2]
475499  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
100856446  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
403978  DLD; dihydrolipoyl dehydrogenase, mitochondrial precursor [KO:K00382] [EC:1.8.1.4]
475775  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
476562  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
485448  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
478634  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
478217  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
478983  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
480092  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
474614  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
482945  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102152275  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
102151507  LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial-like isoform X5 [KO:K00026] [EC:1.1.1.37]
483704  PC; pyruvate carboxylase, mitochondrial isoform X2 [KO:K01958] [EC:6.4.1.1]
403560  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
480255  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
119867228  PDHA2; LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X3 [KO:K00161] [EC:1.2.4.1]
476574  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
489406  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfa00010  Glycolysis / Gluconeogenesis
cfa00053  Ascorbate and aldarate metabolism
cfa00061  Fatty acid biosynthesis
cfa00062  Fatty acid elongation
cfa00071  Fatty acid degradation
cfa00190  Oxidative phosphorylation
cfa00220  Arginine biosynthesis
cfa00250  Alanine, aspartate and glutamate metabolism
cfa00280  Valine, leucine and isoleucine degradation
cfa00350  Tyrosine metabolism
cfa00470  D-Amino acid metabolism
cfa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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