KEGG   PATHWAY: cgj00020
Entry
cgj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium glutamicum ATCC 21831
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cgj00020  Citrate cycle (TCA cycle)
cgj00020

Module
cgj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cgj00020]
cgj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cgj00020]
cgj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cgj00020]
cgj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cgj00020]
cgj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cgj00020]
Other DBs
GO: 0006099
Organism
Corynebacterium glutamicum ATCC 21831 [GN:cgj]
Gene
AR0_04700  citrate synthase [KO:K01647] [EC:2.3.3.1]
AR0_08240  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AR0_03910  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AR0_06145  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AR0_02365  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AR0_12325  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AR0_12330  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AR0_12360  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AR0_03090  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AR0_02390  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AR0_02395  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AR0_02385  succinate dehydrogenase [KO:K00241]
AR0_05550  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
AR0_11395  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AR0_09445  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AR0_04035  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AR0_13900  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AR0_10705  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AR0_10490  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cgj00010  Glycolysis / Gluconeogenesis
cgj00053  Ascorbate and aldarate metabolism
cgj00061  Fatty acid biosynthesis
cgj00071  Fatty acid degradation
cgj00190  Oxidative phosphorylation
cgj00220  Arginine biosynthesis
cgj00250  Alanine, aspartate and glutamate metabolism
cgj00280  Valine, leucine and isoleucine degradation
cgj00350  Tyrosine metabolism
cgj00470  D-Amino acid metabolism
cgj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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