KEGG   PATHWAY: cgq00020
Entry
cgq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium glutamicum AR1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cgq00020  Citrate cycle (TCA cycle)
cgq00020

Module
cgq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cgq00020]
cgq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cgq00020]
cgq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cgq00020]
cgq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cgq00020]
cgq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cgq00020]
Other DBs
GO: 0006099
Organism
Corynebacterium glutamicum AR1 [GN:cgq]
Gene
CGLAR1_04560  citrate synthase [KO:K01647] [EC:2.3.3.1]
CGLAR1_03745  citrate synthase [KO:K01659] [EC:2.3.3.5]
CGLAR1_03930  citrate synthase [KO:K01659] [EC:2.3.3.5]
CGLAR1_08105  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CGLAR1_03770  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CGLAR1_06010  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CGLAR1_02230  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGLAR1_12185  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
CGLAR1_12190  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
CGLAR1_02950  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CGLAR1_12220  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CGLAR1_02255  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
CGLAR1_02260  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CGLAR1_02250  succinate dehydrogenase [KO:K00241]
CGLAR1_05415  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CGLAR1_11245  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CGLAR1_09295  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CGLAR1_03895  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CGLAR1_13765  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CGLAR1_10555  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
CGLAR1_10340  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cgq00010  Glycolysis / Gluconeogenesis
cgq00053  Ascorbate and aldarate metabolism
cgq00061  Fatty acid biosynthesis
cgq00071  Fatty acid degradation
cgq00190  Oxidative phosphorylation
cgq00220  Arginine biosynthesis
cgq00250  Alanine, aspartate and glutamate metabolism
cgq00280  Valine, leucine and isoleucine degradation
cgq00350  Tyrosine metabolism
cgq00470  D-Amino acid metabolism
cgq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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