KEGG   PATHWAY: cin00020
Entry
cin00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ciona intestinalis (yellow sea squirt)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cin00020  Citrate cycle (TCA cycle)
cin00020

Module
cin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cin00020]
cin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cin00020]
cin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cin00020]
Other DBs
GO: 0006099
Organism
Ciona intestinalis (yellow sea squirt) [GN:cin]
Gene
104266666  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
445783  acl; ATP citrate-lyase [KO:K01648] [EC:2.3.3.8]
100186938  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
101243152  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
100184016  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100175603  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
100181307  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
100177499  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
100186950  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
100177680  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
100175390  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
100180742  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100180260  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100185076  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100175858  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100184967  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100183000  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
100181830  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
101242735  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
100186623  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100187217  malate dehydrogenase, cytoplasmic-like isoform X2 [KO:K00025] [EC:1.1.1.37]
100178529  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
100181512  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
100177066  phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
100184477  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
100181861  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
100176043  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cin00010  Glycolysis / Gluconeogenesis
cin00053  Ascorbate and aldarate metabolism
cin00061  Fatty acid biosynthesis
cin00062  Fatty acid elongation
cin00071  Fatty acid degradation
cin00190  Oxidative phosphorylation
cin00220  Arginine biosynthesis
cin00250  Alanine, aspartate and glutamate metabolism
cin00280  Valine, leucine and isoleucine degradation
cin00350  Tyrosine metabolism
cin00470  D-Amino acid metabolism
cin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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