KEGG   PATHWAY: cmar00630
Entry
cmar00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Celeribacter marinus
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmar00630  Glyoxylate and dicarboxylate metabolism
cmar00630

Module
cmar_M00373  Ethylmalonyl pathway [PATH:cmar00630]
cmar_M00621  Glycine cleavage system [PATH:cmar00630]
cmar_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:cmar00630]
Other DBs
GO: 0046487 0043648
Organism
Celeribacter marinus [GN:cmar]
Gene
IMCC12053_2808  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
IMCC12053_2176  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
IMCC12053_387  malate synthase G [KO:K01638] [EC:2.3.3.9]
IMCC12053_2761  malate synthase G [KO:K01638] [EC:2.3.3.9]
IMCC12053_3022  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IMCC12053_734  citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
IMCC12053_691  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IMCC12053_2783  3-ketoacyl-CoA thiolase, acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
IMCC12053_1314  acetyl-CoA acetyltransferase of ethylmalonyl-CoA pathway [KO:K00626] [EC:2.3.1.9]
IMCC12053_1315  acetoacetyl-CoA reductase of ethylmalonyl-CoA pathway [KO:K00023] [EC:1.1.1.36]
IMCC12053_1126  acyl dehydratase [KO:K17865] [EC:4.2.1.55]
IMCC12053_3007  crotonyl-CoA carboxylase/reductase, ethylmalonyl-CoA producing [KO:K14446] [EC:1.3.1.85]
IMCC12053_1089  Methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
IMCC12053_3008  ethylmalonyl-CoA mutase, methylsuccinyl-CoA-forming [KO:K14447] [EC:5.4.99.63]
IMCC12053_1518  Methylsuccinyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
IMCC12053_3017  mesaconyl-CoA hydratase [KO:K14449] [EC:4.2.1.148]
IMCC12053_1300  malyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
IMCC12053_3020  L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K14451] [EC:3.1.2.30]
IMCC12053_947  propionyl-CoA carboxylase biotin-containing subunit [KO:K01965] [EC:6.4.1.3]
IMCC12053_953  propionyl-CoA carboxylase carboxyl transferase subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
IMCC12053_945  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
IMCC12053_1166  glycolate dehydrogenase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
IMCC12053_1165  glycolate dehydrogenase, FAD-binding subunit GlcE [KO:K11472] [EC:1.1.99.14]
IMCC12053_1164  glycolate dehydrogenase, iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
IMCC12053_2974  glyoxylate reductase / Glyoxylate reductase / Hydroxypyruvate reductase [KO:K00015] [EC:1.1.1.26]
IMCC12053_2869  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
IMCC12053_912  HAD-superfamily hydrolase, subfamily IA, variant 1 family protein [KO:K01091] [EC:3.1.3.18]
IMCC12053_3057  hypothetical protein [KO:K01091] [EC:3.1.3.18]
IMCC12053_2438  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
IMCC12053_2561  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
IMCC12053_680  glutamine synthetase type I [KO:K01915] [EC:6.3.1.2]
IMCC12053_2797  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
IMCC12053_2852  glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) [KO:K00281] [EC:1.4.4.2]
IMCC12053_2854  aminomethyltransferase (glycine cleavage system T protein) [KO:K00605] [EC:2.1.2.10]
IMCC12053_3028  dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
IMCC12053_1994  dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
IMCC12053_707  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IMCC12053_2853  glycine cleavage system H protein [KO:K02437]
IMCC12053_202  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
IMCC12053_778  D-glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
IMCC12053_2284  4-Hydroxy-2-oxoglutarate aldolase, 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
IMCC12053_2748  NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
IMCC12053_2746  NAD-dependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
IMCC12053_2745  NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
IMCC12053_2744  NAD-dependent formate dehydrogenase gamma subunit [KO:K00127]
IMCC12053_2490  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
cmar00010  Glycolysis / Gluconeogenesis
cmar00020  Citrate cycle (TCA cycle)
cmar00030  Pentose phosphate pathway
cmar00053  Ascorbate and aldarate metabolism
cmar00071  Fatty acid degradation
cmar00230  Purine metabolism
cmar00250  Alanine, aspartate and glutamate metabolism
cmar00260  Glycine, serine and threonine metabolism
cmar00620  Pyruvate metabolism
cmar00710  Carbon fixation by Calvin cycle
cmar00750  Vitamin B6 metabolism
cmar00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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