PATHWAY: cobe00470
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Entry
cobe00470 Pathway
Name
D-Amino acid metabolism - Cobetia sp. AM6
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
cobe00470
D-Amino acid metabolism
Ortholog table
Module
cobe_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
cobe00470
]
Other DBs
GO:
0046416
Organism
Cobetia sp. AM6 [GN:
cobe
]
Gene
CLAM6_26600
dadX; alanine racemase, catabolic [KO:
K01775
] [EC:
5.1.1.1
]
CLAM6_07320
ddlB; D-alanine--D-alanine ligase B [KO:
K01921
] [EC:
6.3.2.4
]
CLAM6_08020
glsA; glutaminase [KO:
K01425
] [EC:
3.5.1.2
]
CLAM6_28520
hypothetical protein [KO:
K01776
] [EC:
5.1.1.3
]
CLAM6_07280
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
CLAM6_12350
hypothetical protein [KO:
K01779
] [EC:
5.1.1.13
]
CLAM6_15070
aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
CLAM6_11610
dsdA; putative D-serine dehydratase [KO:
K01753
] [EC:
4.3.1.18
]
CLAM6_01360
dapF; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
CLAM6_01370
lysA; diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
CLAM6_21100
4-hydroxyproline 2-epimerase [KO:
K12658
] [EC:
5.1.1.8
]
CLAM6_21200
amino acid dehydrogenase [KO:
K21060
] [EC:1.5.99.-]
CLAM6_21110
dapA_1; dihydrodipicolinate synthase family protein [KO:
K21062
] [EC:
3.5.4.22
]
CLAM6_20730
2,5-dioxovalerate dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
CLAM6_21130
2,5-dioxovalerate dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
CLAM6_22140
2,5-dioxovalerate dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
CLAM6_06420
dadA2; D-amino acid dehydrogenase 2 [KO:
K00285
] [EC:
1.4.5.1
]
CLAM6_24800
dadA; D-amino acid dehydrogenase [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
cobe00010
Glycolysis / Gluconeogenesis
cobe00020
Citrate cycle (TCA cycle)
cobe00250
Alanine, aspartate and glutamate metabolism
cobe00260
Glycine, serine and threonine metabolism
cobe00270
Cysteine and methionine metabolism
cobe00300
Lysine biosynthesis
cobe00310
Lysine degradation
cobe00330
Arginine and proline metabolism
cobe00340
Histidine metabolism
cobe00360
Phenylalanine metabolism
cobe00550
Peptidoglycan biosynthesis
cobe00620
Pyruvate metabolism
KO pathway
ko00470
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