KEGG   PATHWAY: cpoc03008
Entry
cpoc03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Cavia porcellus (domestic guinea pig)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
cpoc03008  Ribosome biogenesis in eukaryotes
cpoc03008

Organism
Cavia porcellus (domestic guinea pig) [GN:cpoc]
Gene
100721543  Csnk2b; casein kinase II subunit beta [KO:K03115]
100719884  Csnk2a2; LOW QUALITY PROTEIN: casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
100714882  Csnk2a1; LOW QUALITY PROTEIN: casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
100724103  Nol6; nucleolar protein 6 [KO:K14544]
100720247  Rrp7a; ribosomal RNA-processing protein 7 homolog A isoform X2 [KO:K14545]
100728719  Wdr43; WD repeat-containing protein 43 [KO:K14546]
100725393  Utp4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
100736159  Utp15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
100735112  Heatr1; HEAT repeat-containing protein 1 [KO:K14550]
100722310  Wdr75; WD repeat-containing protein 75 isoform X1 [KO:K14552]
100713273  Utp18; LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
100723602  Wdr36; LOW QUALITY PROTEIN: WD repeat-containing protein 36 [KO:K14554]
100729859  Tbl3; transducin beta-like protein 3 [KO:K14555]
100724713  Wdr3; WD repeat-containing protein 3 [KO:K14556]
100721060  Utp6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
100729047  Pwp2; periodic tryptophan protein 2 homolog [KO:K14558]
100715911  Mphosph10; U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
100723789  Imp3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
100730033  Imp4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
100735220  Tcof1; treacle protein isoform X1 [KO:K14562]
100722585  Fbl; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
100713850  LOW QUALITY PROTEIN: rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
100717680  Nop56; nucleolar protein 56 [KO:K14564]
100735951  Nop58; nucleolar protein 58 [KO:K14565]
100717558  Snu13; NHP2-like protein 1 [KO:K12845]
100721753  Dkc1; H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
100729214  Nhp2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
100714195  Gar1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
100728268  Nop10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
100723102  Fcf1; rRNA-processing protein FCF1 homolog [KO:K14566]
100735421  Utp14a; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
100732818  U3 small nucleolar RNA-associated protein 14 homolog A-like [KO:K14567]
100718211  Drosha; LOW QUALITY PROTEIN: ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
100722865  Emg1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
100734231  Bms1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
100726257  Nat10; RNA cytidine acetyltransferase isoform X1 [KO:K14521] [EC:2.3.1.-]
100720155  Rcl1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
100714542  Pop1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
100730865  Rpp38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
100718659  Pop4; ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
100729028  Pop5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
100713437  Rpp25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
100725847  Rpp25l; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
100713650  Pop7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
100732791  Rpp30; ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
100722157  Rpp40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
100718431  LOW QUALITY PROTEIN: RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
100712688  Rexo5; RNA exonuclease 5 isoform X4 [KO:K14570] [EC:3.1.-.-]
100733351  Rexo1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
100731479  Rexo2; oligoribonuclease, mitochondrial isoform X1 [KO:K13288] [EC:3.1.-.-]
100732416  Xrn1; 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
100732138  Xrn2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
100721906  Gtpbp4; nucleolar GTP-binding protein 1 [KO:K06943]
100729090  Gnl2; nucleolar GTP-binding protein 2 [KO:K14537]
100720663  Gnl3l; guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
100728491  Gnl3; LOW QUALITY PROTEIN: guanine nucleotide-binding protein-like 3 [KO:K14538]
100722919  Nvl; nuclear valosin-containing protein-like isoform X2 [KO:K14571]
100715023  Mdn1; LOW QUALITY PROTEIN: midasin [KO:K14572]
100727521  Rbm28; RNA-binding protein 28 [KO:K14573]
100721898  Nob1; RNA-binding protein NOB1 isoform X2 [KO:K11883]
100718300  Xpo1; LOW QUALITY PROTEIN: exportin-1 [KO:K14290]
100733259  Nmd3; 60S ribosomal export protein NMD3 [KO:K07562]
100717005  nuclear RNA export factor 2-like [KO:K14284]
100716734  nuclear RNA export factor 2 isoform X1 [KO:K14284]
100728879  Nxf1; nuclear RNA export factor 1 isoform X1 [KO:K14284]
100722753  Nxt1; NTF2-related export protein 1 [KO:K14285]
100716251  Nxt2; NTF2-related export protein 2 isoform X1 [KO:K14285]
100732654  eukaryotic translation initiation factor 6 [KO:K03264]
100732373  eukaryotic translation initiation factor 6 isoform X1 [KO:K03264]
100734229  Sbds; ribosome maturation protein SBDS [KO:K14574]
100729113  Efl1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
100719073  Lsg1; LOW QUALITY PROTEIN: large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
100732878  Spata5; spermatogenesis-associated protein 5 isoform X2 [KO:K14575]
102238515  Ak6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
100731552  Riok1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
100723054  Riok2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
111753690  18S ribosomal RNA [KO:K01979]
111753685  5.8S ribosomal RNA [KO:K01986]
111756064  28S ribosomal RNA [KO:K01982]
100379616  5S ribosomal RNA [KO:K01981]
111753775  5S ribosomal RNA [KO:K01981]
111757898  small nucleolar RNA U3 [KO:K14483]
111755898  small nucleolar RNA U3 [KO:K14483]
111756816  small nucleolar RNA U3 [KO:K14483]
111756820  small nucleolar RNA U3 [KO:K14483]
111758402  small nucleolar RNA U3 [KO:K14483]
111753765  small nucleolar RNA U3 [KO:K14483]
111756817  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
cpoc03010  Ribosome
KO pathway
ko03008   
LinkDB

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