KEGG   PATHWAY: cur00020
Entry
cur00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium urealyticum DSM 7109
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cur00020  Citrate cycle (TCA cycle)
cur00020

Module
cur_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cur00020]
cur_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cur00020]
cur_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cur00020]
cur_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cur00020]
cur_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cur00020]
Other DBs
GO: 0006099
Organism
Corynebacterium urealyticum DSM 7109 [GN:cur]
Gene
cu1557  unnamed protein product [KO:K01647] [EC:2.3.3.1]
cu0448  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
cu1021  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
cu0425  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
cu0678  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
cu1841  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
cu1605  cat1; succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
cu0202  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
cu0203  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
cu0201  sdhC; succinate dehydrogenase subunit [KO:K00241]
cu0613  unnamed protein product [KO:K01679] [EC:4.2.1.2]
cu1376  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
cu0842  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
cu0173  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
cu1304  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
cu1247  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cur00010  Glycolysis / Gluconeogenesis
cur00061  Fatty acid biosynthesis
cur00071  Fatty acid degradation
cur00190  Oxidative phosphorylation
cur00220  Arginine biosynthesis
cur00250  Alanine, aspartate and glutamate metabolism
cur00280  Valine, leucine and isoleucine degradation
cur00350  Tyrosine metabolism
cur00470  D-Amino acid metabolism
cur00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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