KEGG   PATHWAY: dbk00010
Entry
dbk00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Desulfomarina profundi
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dbk00010  Glycolysis / Gluconeogenesis
dbk00010

Module
dbk_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:dbk00010]
dbk_M00002  Glycolysis, core module involving three-carbon compounds [PATH:dbk00010]
dbk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dbk00010]
dbk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dbk00010]
Other DBs
GO: 0006096 0006094
Organism
Desulfomarina profundi [GN:dbk]
Gene
DGMP_28880  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
DGMP_00390  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
DGMP_03550  hypothetical protein [KO:K21071] [EC:2.7.1.11 2.7.1.90]
DGMP_11810  pfkA; ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
DGMP_09440  fbp; fructose-1,6-bisphosphatase class 3 [KO:K04041] [EC:3.1.3.11]
DGMP_09230  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
DGMP_00310  hypothetical protein [KO:K01803] [EC:5.3.1.1]
DGMP_29700  tpi; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
DGMP_00730  gapA; glyceraldehyde-3-phosphate dehydrogenase 1 [KO:K00134] [EC:1.2.1.12]
DGMP_29730  glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
DGMP_29710  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
DGMP_03310  hypothetical protein [KO:K15634] [EC:5.4.2.11]
DGMP_09850  gpmI; putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
DGMP_28290  phosphoglycerate mutase [KO:K15635] [EC:5.4.2.12]
DGMP_21620  eno; enolase [KO:K01689] [EC:4.2.1.11]
DGMP_08930  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
DGMP_13630  hypothetical protein [KO:K00873] [EC:2.7.1.40]
DGMP_00740  phosphoenolpyruvate synthase/pyruvate phosphate dikinase [KO:K01006] [EC:2.7.9.1]
DGMP_27770  hypothetical protein [KO:K01007] [EC:2.7.9.2]
DGMP_27790  hypothetical protein [KO:K01007] [EC:2.7.9.2]
DGMP_27800  pyruvate phosphate dikinase PEP/pyruvate binding subunit [KO:K01007] [EC:2.7.9.2]
DGMP_31910  hypothetical protein [KO:K01007] [EC:2.7.9.2]
DGMP_30400  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DGMP_30410  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DGMP_30420  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DGMP_02010  lpdA_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DGMP_30430  lpdA_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DGMP_04070  porA_1; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
DGMP_23550  porA_2; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
DGMP_04080  2-ketoisovalerate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
DGMP_23560  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
DGMP_04050  hypothetical protein [KO:K00172] [EC:1.2.7.1]
DGMP_23530  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00189] [EC:1.2.7.7 1.2.7.1]
DGMP_23540  hypothetical protein [KO:K00171] [EC:1.2.7.1]
DGMP_07220  por; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DGMP_09630  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DGMP_29040  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DGMP_34380  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DGMP_09640  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DGMP_29050  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DGMP_34400  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DGMP_19790  hypothetical protein [KO:K00002] [EC:1.1.1.2]
DGMP_00770  acsA; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
DGMP_10680  acs_1; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
DGMP_38940  acetyl-CoA synthetase [KO:K22224] [EC:6.2.1.13]
DGMP_33230  acyl-CoA synthetase [KO:K24012] [EC:6.2.1.13]
DGMP_03800  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dbk00020  Citrate cycle (TCA cycle)
dbk00030  Pentose phosphate pathway
dbk00500  Starch and sucrose metabolism
dbk00620  Pyruvate metabolism
dbk00640  Propanoate metabolism
dbk00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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