KEGG   PATHWAY: dct03008
Entry
dct03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Dendrobium catenatum
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
dct03008  Ribosome biogenesis in eukaryotes
dct03008

Organism
Dendrobium catenatum [GN:dct]
Gene
110096563  casein kinase II subunit beta-1 [KO:K03115]
110107375  putative casein kinase II subunit beta-4 isoform X1 [KO:K03115]
110105241  putative casein kinase II subunit beta-4 isoform X1 [KO:K03115]
110103527  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
110116314  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
110097444  casein kinase II subunit alpha-2 [KO:K03097] [EC:2.7.11.1]
110093547  nucleolar protein 6 [KO:K14544]
110101953  uncharacterized protein LOC110101953 isoform X1 [KO:K14545]
110108739  WD repeat-containing protein 43 isoform X1 [KO:K14546]
110114352  WD repeat-containing protein PCN [KO:K14548]
110104035  protein SLOW WALKER 1 [KO:K14549]
110107782  uncharacterized protein At3g06530 isoform X1 [KO:K14550]
110095171  WD repeat-containing protein 75 [KO:K14552]
110102644  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
110092499  WD repeat-containing protein 36 [KO:K14554]
110104741  transducin beta-like protein 3 isoform X1 [KO:K14555]
110115385  WD repeat-containing protein 3 isoform X1 [KO:K14556]
110106254  uncharacterized protein LOC110106254 [KO:K14557]
110093791  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
110094952  periodic tryptophan protein 2 [KO:K14558]
110093150  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
110106803  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
110102184  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
110115180  mediator of RNA polymerase II transcription subunit 36a-like [KO:K14563] [EC:2.1.1.-]
110096623  uncharacterized protein LOC110096623 [KO:K14563] [EC:2.1.1.-]
110111363  mediator of RNA polymerase II transcription subunit 36a [KO:K14563] [EC:2.1.1.-]
110102909  nucleolar protein 56 [KO:K14564]
110105050  nucleolar protein 56-like [KO:K14564]
110115421  probable nucleolar protein 5-2 [KO:K14565]
110093060  NHP2-like protein 1 [KO:K12845]
110102056  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
110101958  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
110094344  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [KO:K11128]
110108376  H/ACA ribonucleoprotein complex subunit 3-like protein [KO:K11130]
110112797  rRNA-processing protein FCF1 homolog [KO:K14566]
110093282  uncharacterized protein C57A7.06 [KO:K14567]
110109448  uncharacterized protein LOC110109448 [KO:K14567]
110105926  ribosomal RNA small subunit methyltransferase NEP1 isoform X1 [KO:K14568] [EC:2.1.1.260]
110101229  ribosomal RNA small subunit methyltransferase nep-1 [KO:K14568] [EC:2.1.1.260]
110111170  ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
110092608  RNA cytidine acetyltransferase 1 isoform X1 [KO:K14521] [EC:2.3.1.-]
110093350  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
110100876  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
110107386  ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
110110681  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
110097862  uncharacterized protein LOC110097862 [KO:K03539] [EC:3.1.26.5]
110110075  small RNA degrading nuclease 5 [KO:K14570] [EC:3.1.-.-]
110092214  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
110098478  5'-3' exoribonuclease 3 [KO:K12619] [EC:3.1.13.-]
110097515  nucleolar GTP-binding protein 1 isoform X1 [KO:K06943]
110106683  nucleolar GTP-binding protein 1 [KO:K06943]
110114822  nuclear/nucleolar GTPase 2-like [KO:K14537]
110099819  nuclear/nucleolar GTPase 2 [KO:K14537]
110095941  guanine nucleotide-binding protein-like NSN1 [KO:K14538]
110101516  cell division control protein 48 homolog C [KO:K14571]
110104822  cell division control protein 48 homolog C-like [KO:K14571]
110113133  midasin isoform X1 [KO:K14572]
110098419  RNA-binding protein 28 [KO:K14573]
110099827  RNA-binding protein NOB1 [KO:K11883]
110110915  GTP-binding nuclear protein Ran-A1-like [KO:K07936]
110114859  GTP-binding nuclear protein Ran-A1 [KO:K07936]
110110197  GTP-binding nuclear protein Ran1-like [KO:K07936]
110092069  protein EXPORTIN 1A [KO:K14290]
110111064  60S ribosomal export protein NMD3-like [KO:K07562]
110107819  60S ribosomal export protein NMD3-like isoform X1 [KO:K07562]
110111449  eukaryotic translation initiation factor 6-2 [KO:K03264]
110111450  eukaryotic translation initiation factor 6-2 [KO:K03264]
110112329  ribosome maturation protein SBDS [KO:K14574]
110093365  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
110106812  GTPase LSG1-1 [KO:K14539] [EC:3.6.1.-]
110106339  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
110098832  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
110104702  serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
110100314  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
110094113  LOW QUALITY PROTEIN: serine/threonine-protein kinase rio2-like [KO:K07179] [EC:2.7.11.1]
114578384  18S ribosomal RNA [KO:K01979]
114578385  28S ribosomal RNA [KO:K01982]
114580567  28S ribosomal RNA [KO:K01982]
114579407  small nucleolar RNA U3 [KO:K14483]
114579408  small nucleolar RNA U3 [KO:K14483]
114580994  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
dct03010  Ribosome
KO pathway
ko03008   
LinkDB

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