KEGG   PATHWAY: dme00020
Entry
dme00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Drosophila melanogaster (fruit fly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dme00020  Citrate cycle (TCA cycle)
dme00020

Module
dme_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dme00020]
dme_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dme00020]
dme_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dme00020]
dme_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dme00020]
dme_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dme00020]
Other DBs
GO: 0006099
Organism
Drosophila melanogaster (fruit fly) [GN:dme]
Gene
Dmel_CG3861  kdn; knockdown, isoform A [KO:K01647] [EC:2.3.3.1]
Dmel_CG14740  CG14740; uncharacterized protein [KO:K01647] [EC:2.3.3.1]
Dmel_CG8322  ATPCL; ATP citrate lyase, isoform E [KO:K01648] [EC:2.3.3.8]
Dmel_CG9244  mAcon1; mitochondrial aconitase 1, isoform E [KO:K01681] [EC:4.2.1.3]
Dmel_CG4900  Irp-1A; iron regulatory protein 1A [KO:K01681] [EC:4.2.1.3]
Dmel_CG4706  mAcon2; mitochondrial aconitase 2 [KO:K01681] [EC:4.2.1.3]
Dmel_CG6342  Irp-1B; iron regulatory protein 1B [KO:K01681] [EC:4.2.1.3]
Dmel_CG7176  Idh; isocitrate dehydrogenase, isoform K [KO:K00031] [EC:1.1.1.42]
Dmel_CG6439  Idh3b; isocitrate dehydrogenase 3b, isoform B [KO:K00030] [EC:1.1.1.41]
Dmel_CG5028  Idh3g; isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma, isoform B [KO:K00030] [EC:1.1.1.41]
Dmel_CG3483  CG3483; uncharacterized protein [KO:K00030] [EC:1.1.1.41]
Dmel_CG32026  CG32026; uncharacterized protein [KO:K00030] [EC:1.1.1.41]
Dmel_CG12233  Idh3a; isocitrate dehydrogenase 3a, isoform D [KO:K00030] [EC:1.1.1.41]
Dmel_CG33791  CG33791; uncharacterized protein, isoform C [KO:K00164] [EC:1.2.4.2]
Dmel_CG11661  Ogdh; oxoglutarate dehydrogenase, isoform I [KO:K00164] [EC:1.2.4.2]
Dmel_CG5214  CG5214; uncharacterized protein [KO:K00658] [EC:2.3.1.61]
Dmel_CG7430  CG7430; uncharacterized protein, isoform B [KO:K00382] [EC:1.8.1.4]
Dmel_CG6255  Scsalpha2; Succinyl-coenzyme A synthetase alpha subunit 2 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
Dmel_CG1065  Scsalpha1; Succinyl-coenzyme A synthetase alpha subunit 1, isoform B [KO:K01899] [EC:6.2.1.4 6.2.1.5]
Dmel_CG10622  ScsbetaG; Succinyl-coenzyme A synthetase beta subunit, GDP-forming, isoform C [KO:K01900] [EC:6.2.1.4 6.2.1.5]
Dmel_CG11963  ScsbetaA; Succinyl-coenzyme A synthetase beta subunit, ADP-forming, isoform B [KO:K01900] [EC:6.2.1.4 6.2.1.5]
Dmel_CG17246  SdhA; succinate dehydrogenase, subunit A (flavoprotein), isoform A [KO:K00234] [EC:1.3.5.1]
Dmel_CG5718  SdhAL; succinate dehydrogenase, subunit A (flavoprotein)-like [KO:K00234] [EC:1.3.5.1]
Dmel_CG3283  SdhB; succinate dehydrogenase, subunit B (iron-sulfur) [KO:K00235] [EC:1.3.5.1]
Dmel_CG7349  SdhBL; succinate dehydrogenase, subunit B (iron-sulfur)-like, isoform C [KO:K00235] [EC:1.3.5.1]
Dmel_CG6629  SdhCL; succinate dehydrogenase, subunit C-like [KO:K00236]
Dmel_CG6666  SdhC; succinate dehydrogenase, subunit C, isoform B [KO:K00236]
Dmel_CG10219  SdhD; succinate dehydrogenase, subunit D [KO:K00237]
Dmel_CG4094  Fum1; fumarase 1, isoform A [KO:K01679] [EC:4.2.1.2]
Dmel_CG6140  Fum3; fumarase 3, isoform B [KO:K01679] [EC:4.2.1.2]
Dmel_CG31874  Fum4; fumarase 4 [KO:K01679] [EC:4.2.1.2]
Dmel_CG4095  Fum2; fumarase 2 [KO:K01679] [EC:4.2.1.2]
Dmel_CG5362  Mdh1; malate dehydrogenase 1, isoform B [KO:K00025] [EC:1.1.1.37]
Dmel_CG10748  CG10748; uncharacterized protein [KO:K00026] [EC:1.1.1.37]
Dmel_CG10749  CG10749; uncharacterized protein [KO:K00026] [EC:1.1.1.37]
Dmel_CG7998  Mdh2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
Dmel_CG1516  PCB; pyruvate carboxylase, isoform M [KO:K01958] [EC:6.4.1.1]
Dmel_CG10924  Pepck2; phosphoenolpyruvate carboxykinase 2, isoform B [KO:K01596] [EC:4.1.1.32]
Dmel_CG17725  Pepck1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
Dmel_CG7024  CG7024; uncharacterized protein [KO:K00161] [EC:1.2.4.1]
Dmel_CG7010  Pdha; pyruvate dehydrogenase E1 alpha subunit, isoform A [KO:K00161] [EC:1.2.4.1]
Dmel_CG11876  Pdhb; pyruvate dehydrogenase E1 beta subunit, isoform D [KO:K00162] [EC:1.2.4.1]
Dmel_CG5261  muc; midline uncoordinated, isoform C [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dme00010  Glycolysis / Gluconeogenesis
dme00053  Ascorbate and aldarate metabolism
dme00061  Fatty acid biosynthesis
dme00062  Fatty acid elongation
dme00071  Fatty acid degradation
dme00190  Oxidative phosphorylation
dme00220  Arginine biosynthesis
dme00250  Alanine, aspartate and glutamate metabolism
dme00280  Valine, leucine and isoleucine degradation
dme00350  Tyrosine metabolism
dme00470  D-Amino acid metabolism
dme00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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