KEGG   PATHWAY: eae00020
Entry
eae00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella aerogenes KCTC 2190
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eae00020  Citrate cycle (TCA cycle)
eae00020

Module
eae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eae00020]
eae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eae00020]
eae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eae00020]
eae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eae00020]
eae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eae00020]
Other DBs
GO: 0006099
Organism
Klebsiella aerogenes KCTC 2190 [GN:eae]
Gene
EAE_14145  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
EAE_21330  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EAE_10895  putative hydratase [KO:K01681] [EC:4.2.1.3]
EAE_11410  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EAE_16590  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EAE_14170  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EAE_14175  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EAE_11390  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EAE_14185  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
EAE_14180  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
EAE_14160  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EAE_14165  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EAE_14150  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
EAE_14155  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
EAE_09240  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EAE_09235  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
EAE_09230  fumarate reductase subunit C [KO:K00246]
EAE_09225  fumarate reductase subunit D [KO:K00247]
EAE_18205  fumarate hydratase FumB [KO:K01676] [EC:4.2.1.2]
EAE_18045  fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
EAE_18060  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EAE_17170  hypothetical protein [KO:K01675] [EC:4.2.1.2]
EAE_04590  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EAE_24170  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EAE_18245  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EAE_05235  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EAE_11380  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
EAE_11385  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
EAE_20590  putative pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eae00010  Glycolysis / Gluconeogenesis
eae00053  Ascorbate and aldarate metabolism
eae00061  Fatty acid biosynthesis
eae00071  Fatty acid degradation
eae00190  Oxidative phosphorylation
eae00220  Arginine biosynthesis
eae00250  Alanine, aspartate and glutamate metabolism
eae00280  Valine, leucine and isoleucine degradation
eae00350  Tyrosine metabolism
eae00470  D-Amino acid metabolism
eae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system