KEGG   PATHWAY: ebl00020
Entry
ebl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli BL21(DE3)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ebl00020  Citrate cycle (TCA cycle)
ebl00020

Module
ebl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ebl00020]
ebl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ebl00020]
ebl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ebl00020]
ebl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ebl00020]
ebl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ebl00020]
Other DBs
GO: 0006099
Organism
Escherichia coli BL21(DE3) [GN:ebl]
Gene
ECD_00680  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECD_01253  acnA; aconitate hydratase 1; aconitase A [KO:K01681] [EC:4.2.1.3]
ECD_00117  acnB; aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECD_01134  icd; isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase [KO:K00031] [EC:1.1.1.42]
ECD_00685  sucA; 2-oxoglutarate decarboxylase, thiamine triphosphate-binding [KO:K00164] [EC:1.2.4.2]
ECD_00686  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
ECD_00115  lpd; dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECD_00688  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
ECD_00687  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ECD_00683  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECD_00684  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
ECD_00681  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
ECD_00682  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
ECD_04026  frdA; anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ECD_04025  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
ECD_04024  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
ECD_04023  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
ECD_01581  fumA; fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
ECD_03993  fumB; anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
ECD_01580  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
ECD_01644  ydhZ; uncharacterized protein [KO:K01675] [EC:4.2.1.2]
ECD_02760  yggD; MtlR family putative transcriptional repressor [KO:K01774] [EC:4.2.1.2]
ECD_03096  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
ECD_02137  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
ECD_03255  pck; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
ECD_00113  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding [KO:K00163] [EC:1.2.4.1]
ECD_00114  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
ECD_01349  pfo; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ebl00010  Glycolysis / Gluconeogenesis
ebl00053  Ascorbate and aldarate metabolism
ebl00061  Fatty acid biosynthesis
ebl00071  Fatty acid degradation
ebl00190  Oxidative phosphorylation
ebl00220  Arginine biosynthesis
ebl00250  Alanine, aspartate and glutamate metabolism
ebl00280  Valine, leucine and isoleucine degradation
ebl00350  Tyrosine metabolism
ebl00470  D-Amino acid metabolism
ebl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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