KEGG   PATHWAY: ecad00020
Entry
ecad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Erigeron canadensis (horseweed)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecad00020  Citrate cycle (TCA cycle)
ecad00020

Module
ecad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecad00020]
ecad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecad00020]
ecad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecad00020]
ecad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecad00020]
ecad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecad00020]
Other DBs
GO: 0006099
Organism
Erigeron canadensis (horseweed) [GN:ecad]
Gene
122581292  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
122595109  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
122609270  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
122578169  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
122578313  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
122581282  ATP-citrate synthase beta chain protein 1-like isoform X1 [KO:K01648] [EC:2.3.3.8]
122596320  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
122599709  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
122592625  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
122599081  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
122602001  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
122602738  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
122590316  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
122602775  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
122581052  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
122583092  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
122590593  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122598650  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122600912  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122592931  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122595894  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122599723  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
122602394  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122578403  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
122595555  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
122610755  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122579218  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122591080  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122586810  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
122580063  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122598252  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
122589138  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122607899  uncharacterized protein LOC122607899 [KO:K00236]
122583901  uncharacterized protein LOC122583901 [KO:K25801]
122590959  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
122597992  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
122600426  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
122579908  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
122595213  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122607443  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
122586743  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
122599168  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
122600536  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122603327  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
122578487  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
122578224  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
122606929  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
122603796  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
122580054  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
122595211  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
122596359  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
122595113  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
122584448  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
122586980  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
122601435  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecad00010  Glycolysis / Gluconeogenesis
ecad00053  Ascorbate and aldarate metabolism
ecad00061  Fatty acid biosynthesis
ecad00062  Fatty acid elongation
ecad00071  Fatty acid degradation
ecad00190  Oxidative phosphorylation
ecad00220  Arginine biosynthesis
ecad00250  Alanine, aspartate and glutamate metabolism
ecad00280  Valine, leucine and isoleucine degradation
ecad00350  Tyrosine metabolism
ecad00470  D-Amino acid metabolism
ecad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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