KEGG   PATHWAY: ecoi00240
Entry
ecoi00240                   Pathway                                
Name
Pyrimidine metabolism - Escherichia coli O18:K1 PMV-1 (ExPEC)
Class
Metabolism; Nucleotide metabolism
Pathway map
ecoi00240  Pyrimidine metabolism
ecoi00240

Module
ecoi_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:ecoi00240]
ecoi_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ecoi00240]
ecoi_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ecoi00240]
ecoi_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:ecoi00240]
ecoi_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:ecoi00240]
Other DBs
GO: 0006220 0006213
Organism
Escherichia coli O18:K1 PMV-1 (ExPEC) [GN:ecoi]
Gene
ECOPMV1_00032  carB; Carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
ECOPMV1_00031  carA; Carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5]
ECOPMV1_04715  pyrB; Aspartate carbamoyltransferase catalytic chain [KO:K00609] [EC:2.1.3.2]
ECOPMV1_04714  pyrI; Aspartate carbamoyltransferase regulatory chain [KO:K00610]
ECOPMV1_01140  pyrC; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
ECOPMV1_00975  pyrD; Dihydroorotate dehydrogenase (quinone) [KO:K00254] [EC:1.3.5.2]
ECOPMV1_03976  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
ECOPMV1_01479  pyrF; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
ECOPMV1_00176  pyrH; Uridylate kinase [KO:K09903] [EC:2.7.4.22]
ECOPMV1_02703  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
ECOPMV1_03037  mazG; Nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
ECOPMV1_03551  yhdE; Maf-like protein yhdE [KO:K06287] [EC:3.6.1.-]
ECOPMV1_03401  hypothetical protein [KO:K07043] [EC:3.6.1.-]
ECOPMV1_03036  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
ECOPMV1_00947  cmk; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
ECOPMV1_01857  nudG; CTP pyrophosphohydrolase [KO:K08320] [EC:3.6.1.65]
ECOPMV1_02224  udk; Uridine kinase [KO:K00876] [EC:2.7.1.48]
ECOPMV1_00467  ushA; hypothetical protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
ECOPMV1_03004  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
ECOPMV1_00681  nagD; hypothetical protein [KO:K02566] [EC:3.1.3.5]
ECOPMV1_04833  yjjG; Pyrimidine 5'-nucleotidase YjjG [KO:K08723] [EC:3.1.3.-]
ECOPMV1_04185  udp; Uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
ECOPMV1_00378  hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
ECOPMV1_02679  upp; Uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
ECOPMV1_04685  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor [KO:K01119] [EC:3.1.4.16 3.1.3.6]
ECOPMV1_02326  psuK_2; Pseudouridine kinase [KO:K16328] [EC:2.7.1.83]
ECOPMV1_02325  psuG; Pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
ECOPMV1_02322  rihB; Pyrimidine-specific ribonucleoside hydrolase rihB [KO:K10213] [EC:3.2.2.8]
ECOPMV1_00661  rihA; Pyrimidine-specific ribonucleoside hydrolase rihA [KO:K01250] [EC:3.2.2.-]
ECOPMV1_00028  rihC; Non-specific ribonucleoside hydrolase rihC [KO:K12700] [EC:3.2.2.-]
ECOPMV1_03052  ygdH; LOG family protein ygdH [KO:K06966] [EC:3.2.2.10 3.2.2.-]
ECOPMV1_02304  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
ECOPMV1_00343  codA; Cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
ECOPMV1_04706  nrdD; Anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
ECOPMV1_02223  dcd; Deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
ECOPMV1_02395  nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha [KO:K00525] [EC:1.17.4.1]
ECOPMV1_02929  nrdE; Ribonucleoside-diphosphate reductase 2 subunit alpha [KO:K00525] [EC:1.17.4.1]
ECOPMV1_02396  nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta [KO:K00526] [EC:1.17.4.1]
ECOPMV1_02930  nrdF; Ribonucleoside-diphosphate reductase 2 subunit beta [KO:K00526] [EC:1.17.4.1]
ECOPMV1_02450  yfbR; 5'-nucleotidase yfbR [KO:K08722] [EC:3.1.3.89]
ECOPMV1_04437  hypothetical protein [KO:K06952] [EC:3.1.3.89]
ECOPMV1_00523  hypothetical protein [KO:K06952] [EC:3.1.3.89]
ECOPMV1_01177  tmk; Thymidylate kinase [KO:K00943] [EC:2.7.4.9]
ECOPMV1_03974  dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
ECOPMV1_04842  deoA; Thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
ECOPMV1_01370  tdk; Thymidine kinase [KO:K00857] [EC:2.7.1.21]
ECOPMV1_03114  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
ECOPMV1_02307  preT; NAD-dependent dihydropyrimidine dehydrogenase sunbunit PreT [KO:K17722] [EC:1.3.1.1]
ECOPMV1_02308  preA; NAD-dependent dihydropyrimidine dehydrogenase subunit PreA [KO:K17723] [EC:1.3.1.1]
ECOPMV1_03145  hyuA; D-phenylhydantoinase [KO:K01464] [EC:3.5.2.2]
ECOPMV1_01034  rutA; Pyrimidine monooxygenase RutA [KO:K09018] [EC:1.14.99.46]
ECOPMV1_01029  rutF; FMN reductase (NADH) RutF [KO:K09024] [EC:1.5.1.-]
ECOPMV1_01033  rutB_1; Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB [KO:K09020] [EC:3.5.1.110]
ECOPMV1_01032  rutC; Putative aminoacrylate peracid reductase RutC [KO:K09021]
ECOPMV1_01031  rutD; Putative aminoacrylate hydrolase RutD [KO:K09023] [EC:3.5.1.-]
ECOPMV1_01670  ydfG; NADP-dependent 3-hydroxy acid dehydrogenase YdfG [KO:K16066] [EC:1.1.1.381 1.1.1.-]
ECOPMV1_01030  rutE; putative malonic semialdehyde reductase RutE [KO:K09019] [EC:1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
ecoi00030  Pentose phosphate pathway
ecoi00220  Arginine biosynthesis
ecoi00250  Alanine, aspartate and glutamate metabolism
ecoi00280  Valine, leucine and isoleucine degradation
ecoi00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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