KEGG   PATHWAY: ecz00020
Entry
ecz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O45:K1:H7 S88 (ExPEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecz00020  Citrate cycle (TCA cycle)
ecz00020

Module
ecz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecz00020]
ecz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecz00020]
ecz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecz00020]
ecz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecz00020]
ecz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecz00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O45:K1:H7 S88 (ExPEC) [GN:ecz]
Gene
ECS88_0745  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECS88_1416  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
ECS88_0788  ybhJ; putative enzyme [KO:K01681] [EC:4.2.1.3]
ECS88_0127  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECS88_1151  icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage [KO:K00031] [EC:1.1.1.42]
ECS88_0751  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
ECS88_4534  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ECS88_0752  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
ECS88_4535  sucB; dihydrolipoamide succinyltransferase (E2 component) [KO:K00658] [EC:2.3.1.61]
ECS88_0125  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
ECS88_4536  putative dihydrolipoyl dehydrogenase, E3 component (lpd-like) [KO:K00382] [EC:1.8.1.4]
ECS88_0754  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
ECS88_4538  sucD; Succinyl-CoA synthetase alpha chain (SCS-alpha) [KO:K01902] [EC:6.2.1.5]
ECS88_0753  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ECS88_4537  sucC; Succinyl-CoA synthetase beta chain (SCS-beta) [KO:K01903] [EC:6.2.1.5]
ECS88_0749  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECS88_0750  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
ECS88_0747  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
ECS88_0748  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
ECS88_4742  frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ECS88_4741  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
ECS88_4740  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
ECS88_4739  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
ECS88_1658  fumA; fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
ECS88_4623  fumB; anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
ECS88_1657  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
ECS88_1723  ydhZ; conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
ECS88_3210  yggD; putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ECS88_3612  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
ECS88_2358  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
ECS88_3790  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECS88_0123  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
ECS88_0124  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
ECS88_1493  ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecz00010  Glycolysis / Gluconeogenesis
ecz00053  Ascorbate and aldarate metabolism
ecz00061  Fatty acid biosynthesis
ecz00071  Fatty acid degradation
ecz00190  Oxidative phosphorylation
ecz00220  Arginine biosynthesis
ecz00250  Alanine, aspartate and glutamate metabolism
ecz00280  Valine, leucine and isoleucine degradation
ecz00350  Tyrosine metabolism
ecz00470  D-Amino acid metabolism
ecz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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