KEGG   PATHWAY: eke00630
Entry
eke00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Epidermidibacterium keratini
Class
Metabolism; Carbohydrate metabolism
Pathway map
eke00630  Glyoxylate and dicarboxylate metabolism
eke00630

Module
eke_M00621  Glycine cleavage system [PATH:eke00630]
eke_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:eke00630]
Other DBs
GO: 0046487 0043648
Organism
Epidermidibacterium keratini [GN:eke]
Gene
EK0264_07355  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EK0264_16015  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EK0264_02390  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EK0264_16420  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EK0264_14985  citrate synthase [KO:K01647] [EC:2.3.3.1]
EK0264_16040  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
EK0264_16045  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
EK0264_18710  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EK0264_07670  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EK0264_16525  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EK0264_00885  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EK0264_10340  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
EK0264_14050  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EK0264_19130  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
EK0264_02170  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EK0264_16520  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
EK0264_16435  protein meaA [KO:K14447] [EC:5.4.99.63]
EK0264_18180  hypothetical protein [KO:K14449] [EC:4.2.1.148]
EK0264_04565  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
EK0264_15245  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
EK0264_15260  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
EK0264_15255  acyl-CoA carboxylase subunit epsilon [KO:K27095]
EK0264_02570  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
EK0264_02605  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
EK0264_02610  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
EK0264_12010  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EK0264_04480  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EK0264_10760  catalase [KO:K03781] [EC:1.11.1.6]
EK0264_08975  catalase [KO:K03781] [EC:1.11.1.6]
EK0264_13090  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
EK0264_01210  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
EK0264_02300  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EK0264_02385  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EK0264_17645  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EK0264_19070  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
EK0264_02220  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EK0264_02340  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EK0264_19095  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EK0264_12535  glycerate kinase [KO:K00865] [EC:2.7.1.165]
EK0264_02180  glycerate kinase [KO:K00865] [EC:2.7.1.165]
EK0264_10210  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EK0264_04500  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EK0264_16200  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
EK0264_09650  dehydrogenase [KO:K00123] [EC:1.17.1.9]
EK0264_09655  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
EK0264_09660  4Fe-4S dicluster domain-containing protein [KO:K00124]
EK0264_10745  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EK0264_18875  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
eke00010  Glycolysis / Gluconeogenesis
eke00020  Citrate cycle (TCA cycle)
eke00030  Pentose phosphate pathway
eke00053  Ascorbate and aldarate metabolism
eke00071  Fatty acid degradation
eke00230  Purine metabolism
eke00250  Alanine, aspartate and glutamate metabolism
eke00260  Glycine, serine and threonine metabolism
eke00620  Pyruvate metabolism
eke00710  Carbon fixation by Calvin cycle
eke00750  Vitamin B6 metabolism
eke00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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