KEGG   PATHWAY: epf00020
Entry
epf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Exiguobacterium profundum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
epf00020  Citrate cycle (TCA cycle)
epf00020

Module
epf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:epf00020]
epf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:epf00020]
epf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:epf00020]
epf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:epf00020]
Other DBs
GO: 0006099
Organism
Exiguobacterium profundum [GN:epf]
Gene
OE059_05530  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
OE059_06875  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
OE059_05535  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OE059_10885  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
OE059_10880  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
OE059_06330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OE059_09695  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OE059_09115  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OE059_09120  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OE059_10495  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OE059_10490  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OE059_10500  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
OE059_08105  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OE059_05540  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OE059_14700  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
OE059_09610  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
OE059_05155  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
OE059_09710  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
OE059_09705  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
OE059_09700  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
epf00010  Glycolysis / Gluconeogenesis
epf00053  Ascorbate and aldarate metabolism
epf00061  Fatty acid biosynthesis
epf00071  Fatty acid degradation
epf00190  Oxidative phosphorylation
epf00220  Arginine biosynthesis
epf00250  Alanine, aspartate and glutamate metabolism
epf00280  Valine, leucine and isoleucine degradation
epf00350  Tyrosine metabolism
epf00470  D-Amino acid metabolism
epf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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