KEGG   PATHWAY: eps00020
Entry
eps00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Endoriftia persephone
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eps00020  Citrate cycle (TCA cycle)
eps00020

Module
eps_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eps00020]
eps_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eps00020]
eps_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eps00020]
eps_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eps00020]
Other DBs
GO: 0006099
Organism
Candidatus Endoriftia persephone [GN:eps]
Gene
L0Y14_07455  citrate synthase [KO:K01647] [EC:2.3.3.1]
L0Y14_16010  citrate synthase [KO:K01647] [EC:2.3.3.1]
L0Y14_12015  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
L0Y14_06620  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
L0Y14_12010  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L0Y14_13875  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
L0Y14_13880  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
L0Y14_03490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L0Y14_09275  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L0Y14_16040  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
L0Y14_10635  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
L0Y14_11960  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
L0Y14_16045  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
L0Y14_10630  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
L0Y14_11965  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
L0Y14_11970  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
L0Y14_11955  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
L0Y14_16075  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L0Y14_16070  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L0Y14_07475  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L0Y14_07700  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L0Y14_07480  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L0Y14_07695  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L0Y14_07465  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
L0Y14_07705  succinate dehydrogenase [KO:K00241]
L0Y14_07470  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
L0Y14_13885  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
L0Y14_16015  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L0Y14_16020  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L0Y14_12030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L0Y14_03480  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
L0Y14_03485  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
L0Y14_13380  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
L0Y14_07110  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
L0Y14_07260  2-oxoacid:acceptor oxidoreductase family protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
L0Y14_16065  pyruvate ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eps00010  Glycolysis / Gluconeogenesis
eps00053  Ascorbate and aldarate metabolism
eps00061  Fatty acid biosynthesis
eps00071  Fatty acid degradation
eps00190  Oxidative phosphorylation
eps00220  Arginine biosynthesis
eps00250  Alanine, aspartate and glutamate metabolism
eps00280  Valine, leucine and isoleucine degradation
eps00350  Tyrosine metabolism
eps00470  D-Amino acid metabolism
eps00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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