KEGG   PATHWAY: erp00020
Entry
erp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Erwinia rhapontici
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
erp00020  Citrate cycle (TCA cycle)
erp00020

Module
erp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:erp00020]
erp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:erp00020]
erp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:erp00020]
erp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:erp00020]
erp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:erp00020]
Other DBs
GO: 0006099
Organism
Erwinia rhapontici [GN:erp]
Gene
LJN55_06370  citrate synthase [KO:K01647] [EC:2.3.3.1]
LJN55_12640  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LJN55_19140  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LJN55_09665  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LJN55_06395  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LJN55_06400  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LJN55_19205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LJN55_06410  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LJN55_06405  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LJN55_06385  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LJN55_06390  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LJN55_06375  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
LJN55_06380  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
LJN55_20870  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
LJN55_20875  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
LJN55_20880  frdC; fumarate reductase subunit FrdC [KO:K00246]
LJN55_20885  frdD; fumarate reductase subunit FrdD [KO:K00247]
LJN55_09865  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LJN55_10860  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LJN55_02445  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LJN55_22470  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LJN55_11335  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LJN55_00720  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LJN55_01750  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LJN55_19215  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LJN55_19210  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
erp00010  Glycolysis / Gluconeogenesis
erp00053  Ascorbate and aldarate metabolism
erp00061  Fatty acid biosynthesis
erp00071  Fatty acid degradation
erp00190  Oxidative phosphorylation
erp00220  Arginine biosynthesis
erp00250  Alanine, aspartate and glutamate metabolism
erp00280  Valine, leucine and isoleucine degradation
erp00350  Tyrosine metabolism
erp00470  D-Amino acid metabolism
erp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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