KEGG   PATHWAY: eum00020
Entry
eum00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O17:K52:H18 UMN026 (ExPEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eum00020  Citrate cycle (TCA cycle)
eum00020

Module
eum_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eum00020]
eum_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eum00020]
eum_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eum00020]
eum_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eum00020]
eum_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eum00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O17:K52:H18 UMN026 (ExPEC) [GN:eum]
Gene
ECUMN_0798  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECUMN_0856  ybhJ; putative enzyme [KO:K01681] [EC:4.2.1.3]
ECUMN_1578  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
ECUMN_0115  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECUMN_1380  icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage [KO:K00031] [EC:1.1.1.42]
ECUMN_0803  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
ECUMN_0804  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
ECUMN_0113  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
ECUMN_0806  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
ECUMN_0805  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ECUMN_0801  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECUMN_0802  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
ECUMN_0799  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
ECUMN_0800  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
ECUMN_4690  frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ECUMN_4689  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
ECUMN_4688  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
ECUMN_4687  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
ECUMN_0810  Fumarate hydratase class I, beta subunit, aerobic (Fumarase) [KO:K01676] [EC:4.2.1.2]
ECUMN_4654  fumB; anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
ECUMN_1901  fumA; fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
ECUMN_1900  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
ECUMN_1964  ydhZ; conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
ECUMN_3279  yggD; putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ECUMN_3710  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
ECUMN_2546  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
ECUMN_3862  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECUMN_0111  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
ECUMN_0112  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
ECUMN_1644  ydbK; putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eum00010  Glycolysis / Gluconeogenesis
eum00053  Ascorbate and aldarate metabolism
eum00061  Fatty acid biosynthesis
eum00071  Fatty acid degradation
eum00190  Oxidative phosphorylation
eum00220  Arginine biosynthesis
eum00250  Alanine, aspartate and glutamate metabolism
eum00280  Valine, leucine and isoleucine degradation
eum00350  Tyrosine metabolism
eum00470  D-Amino acid metabolism
eum00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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