KEGG   PATHWAY: faf00020
Entry
faf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fervidibacillus albus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
faf00020  Citrate cycle (TCA cycle)
faf00020

Module
faf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:faf00020]
faf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:faf00020]
faf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:faf00020]
faf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:faf00020]
faf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:faf00020]
Other DBs
GO: 0006099
Organism
Fervidibacillus albus [GN:faf]
Gene
OE104_07545  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
OE104_02165  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
OE104_06160  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
OE104_02170  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OE104_06995  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
OE104_06990  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
OE104_07335  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OE104_03855  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OE104_05130  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OE104_05125  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OE104_13910  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
OE104_02410  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OE104_02415  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OE104_02405  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
OE104_11625  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OE104_02175  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OE104_07575  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
OE104_07260  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
OE104_01565  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
OE104_07350  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
OE104_07345  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
OE104_07340  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
OE104_05580  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
faf00010  Glycolysis / Gluconeogenesis
faf00053  Ascorbate and aldarate metabolism
faf00061  Fatty acid biosynthesis
faf00071  Fatty acid degradation
faf00190  Oxidative phosphorylation
faf00220  Arginine biosynthesis
faf00250  Alanine, aspartate and glutamate metabolism
faf00280  Valine, leucine and isoleucine degradation
faf00350  Tyrosine metabolism
faf00470  D-Amino acid metabolism
faf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system