KEGG   PATHWAY: foc03008
Entry
foc03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Frankliniella occidentalis (western flower thrips)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
foc03008  Ribosome biogenesis in eukaryotes
foc03008

Organism
Frankliniella occidentalis (western flower thrips) [GN:foc]
Gene
113206390  casein kinase II subunit beta [KO:K03115]
113206446  casein kinase II subunit beta [KO:K03115]
113209748  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
113208197  nucleolar protein 6 [KO:K14544]
113210016  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
113211700  WD repeat-containing protein 43 [KO:K14546]
113202797  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
113203699  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
113205711  HEAT repeat-containing protein 1 homolog [KO:K14550]
113212688  WD repeat-containing protein 75 [KO:K14552]
113209931  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
113212372  WD repeat-containing protein 36 [KO:K14554]
113215015  transducin beta-like protein 3 [KO:K14555]
113214699  WD repeat-containing protein 3 [KO:K14556]
113205917  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
113207645  periodic tryptophan protein 2 homolog isoform X2 [KO:K14558]
113214988  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
113209318  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
113218281  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
113210688  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
113217981  nucleolar protein 56 [KO:K14564]
113209637  nucleolar protein 58 isoform X1 [KO:K14565]
113208114  NHP2-like protein 1 homolog [KO:K12845]
113209775  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
113211595  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
113207978  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
113206019  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
113216871  rRNA-processing protein FCF1 homolog [KO:K14566]
113213128  U3 small nucleolar RNA-associated protein 14 homolog C [KO:K14567]
113206736  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
113203444  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
113203905  ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
113202850  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
113209659  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
113213397  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
113213229  uncharacterized protein LOC113213229 [KO:K14523] [EC:3.1.26.5]
113213423  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
113208241  uncharacterized protein LOC113208241 [KO:K03537] [EC:3.1.26.5]
113215095  ribonuclease P protein subunit p25-like protein isoform X1 [KO:K14525] [EC:3.1.26.5]
113203438  ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
113212131  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
113206223  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
113215970  transducin beta-like protein 2 [KO:K14570] [EC:3.1.-.-]
113208061  uncharacterized protein LOC113208061 [KO:K14570] [EC:3.1.-.-]
113212608  probable oligoribonuclease [KO:K13288] [EC:3.1.-.-]
113210747  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
113206416  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
113213262  nucleolar GTP-binding protein 1 [KO:K06943]
113215167  nucleolar GTP-binding protein 2 [KO:K14537]
113201912  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
113210148  nuclear valosin-containing protein-like [KO:K14571]
113214468  midasin [KO:K14572]
113209093  RNA-binding protein 28 isoform X2 [KO:K14573]
113201887  RNA-binding protein NOB1 [KO:K11883]
113207906  GTP-binding nuclear protein Ran [KO:K07936]
113212983  exportin-1 [KO:K14290]
113203821  60S ribosomal export protein NMD3 [KO:K07562]
113201841  nuclear RNA export factor 1 [KO:K14284]
113212147  NTF2-related export protein [KO:K14285]
113206041  eukaryotic translation initiation factor 6 [KO:K03264]
113202013  ribosome maturation protein SBDS [KO:K14574]
113212506  elongation factor-like GTPase 1 isoform X1 [KO:K14536] [EC:3.6.5.-]
113204967  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
113208288  ribosome biogenesis protein SPATA5 isoform X1 [KO:K14575]
113215050  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
113203814  serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
113201744  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
113212716  large subunit ribosomal RNA [KO:K01982]
113209514  small nucleolar RNA U3 [KO:K14483]
113205689  small nucleolar RNA U3 [KO:K14483]
113202199  small nucleolar RNA U3 [KO:K14483]
127751768  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
foc03010  Ribosome
KO pathway
ko03008   
LinkDB

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