KEGG   PATHWAY: ftl00020
Entry
ftl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. holarctica LVS
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftl00020  Citrate cycle (TCA cycle)
ftl00020

Module
ftl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftl00020]
ftl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftl00020]
ftl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftl00020]
ftl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftl00020]
ftl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftl00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. holarctica LVS [GN:ftl]
Gene
FTL_1789  citrate synthase [KO:K01647] [EC:2.3.3.1]
FTL_1772  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FTL_0588  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FTL_1784  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FTL_1783  dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FTL_0311  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FTL_1554  Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
FTL_1553  Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
FTL_1786  succinate dehydrogenase, catalytic and NAD/flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FTL_1785  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
FTL_1788  succinate dehydrogenase, cytochrome b556 [KO:K00241]
FTL_1787  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
FTL_0525  fumerate hydratase [KO:K01676] [EC:4.2.1.2]
FTL_0217  fumarate hydratase, Class II [KO:K01679] [EC:4.2.1.2]
FTL_0987  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FTL_1616  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FTL_0309  pyruvate dehydrogenase, E1 component [KO:K00163] [EC:1.2.4.1]
FTL_0310  pyruvate dehydrogenase, E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftl00010  Glycolysis / Gluconeogenesis
ftl00061  Fatty acid biosynthesis
ftl00071  Fatty acid degradation
ftl00190  Oxidative phosphorylation
ftl00220  Arginine biosynthesis
ftl00250  Alanine, aspartate and glutamate metabolism
ftl00280  Valine, leucine and isoleucine degradation
ftl00470  D-Amino acid metabolism
ftl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system