KEGG   PATHWAY: fwa00020
Entry
fwa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Formimonas warabiya
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fwa00020  Citrate cycle (TCA cycle)
fwa00020

Module
fwa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fwa00020]
fwa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fwa00020]
Other DBs
GO: 0006099
Organism
Candidatus Formimonas warabiya [GN:fwa]
Gene
DCMF_16735  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DCMF_22640  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DCMF_24025  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DCMF_01715  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DCMF_06190  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DCMF_10375  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DCMF_22700  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DCMF_23990  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DCMF_10370  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DCMF_21785  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DCMF_01220  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DCMF_18355  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DCMF_22710  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DCMF_28365  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DCMF_00440  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DCMF_06125  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DCMF_09680  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DCMF_10360  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DCMF_18360  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DCMF_22715  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DCMF_28370  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DCMF_00445  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DCMF_06120  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DCMF_09675  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DCMF_10355  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DCMF_22720  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DCMF_28375  oxidoreductase [KO:K00177] [EC:1.2.7.3]
DCMF_00450  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DCMF_06115  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DCMF_09670  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DCMF_10350  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DCMF_18370  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
DCMF_22705  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DCMF_28360  oxidoreductase [KO:K00176] [EC:1.2.7.3]
DCMF_00435  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DCMF_06130  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DCMF_09685  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DCMF_10365  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DCMF_16030  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DCMF_00460  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DCMF_09425  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DCMF_00455  hypothetical protein [KO:K01903] [EC:6.2.1.5]
DCMF_09430  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DCMF_00385  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
DCMF_16020  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DCMF_05520  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DCMF_06105  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DCMF_16015  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DCMF_05515  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DCMF_06100  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DCMF_16025  hypothetical protein [KO:K00241]
DCMF_05525  hypothetical protein [KO:K00241]
DCMF_06110  hypothetical protein [KO:K00241]
DCMF_12060  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DCMF_16010  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DCMF_06095  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DCMF_09475  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DCMF_09600  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DCMF_12055  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
DCMF_16005  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
DCMF_06090  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
DCMF_09480  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
DCMF_09605  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
DCMF_24450  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DCMF_17770  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DCMF_08990  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DCMF_08025  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
DCMF_13985  hypothetical protein [KO:K00170] [EC:1.2.7.1]
DCMF_17495  hypothetical protein [KO:K00170] [EC:1.2.7.1]
DCMF_08030  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
DCMF_13970  hypothetical protein [KO:K00172] [EC:1.2.7.1]
DCMF_17510  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
DCMF_08015  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
DCMF_13975  hypothetical protein [KO:K00171] [EC:1.2.7.1]
DCMF_17505  hypothetical protein [KO:K00171] [EC:1.2.7.1]
DCMF_23195  hypothetical protein [KO:K00171] [EC:1.2.7.1]
DCMF_08020  ferredoxin [KO:K00171] [EC:1.2.7.1]
DCMF_18240  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fwa00010  Glycolysis / Gluconeogenesis
fwa00053  Ascorbate and aldarate metabolism
fwa00061  Fatty acid biosynthesis
fwa00071  Fatty acid degradation
fwa00190  Oxidative phosphorylation
fwa00220  Arginine biosynthesis
fwa00250  Alanine, aspartate and glutamate metabolism
fwa00280  Valine, leucine and isoleucine degradation
fwa00350  Tyrosine metabolism
fwa00470  D-Amino acid metabolism
fwa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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