KEGG   PATHWAY: fyt00630
Entry
fyt00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Fuscovulum ytuae
Class
Metabolism; Carbohydrate metabolism
Pathway map
fyt00630  Glyoxylate and dicarboxylate metabolism
fyt00630

Module
fyt_M00373  Ethylmalonyl pathway [PATH:fyt00630]
fyt_M00621  Glycine cleavage system [PATH:fyt00630]
fyt_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:fyt00630]
Other DBs
GO: 0046487 0043648
Organism
Fuscovulum ytuae [GN:fyt]
Gene
QF092_07105  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
QF092_05495  malate synthase G [KO:K01638] [EC:2.3.3.9]
QF092_08925  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QF092_05385  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QF092_04695  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QF092_14510  sucD; succinate--CoA ligase subunit alpha [KO:K08692] [EC:6.2.1.9]
QF092_14515  malate--CoA ligase subunit beta [KO:K14067] [EC:6.2.1.9]
QF092_07445  thiolase family protein [KO:K00626] [EC:2.3.1.9]
QF092_09670  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
QF092_11325  bktB; beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
QF092_14605  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
QF092_14610  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
QF092_09855  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
QF092_18080  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
QF092_00790  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
QF092_18065  protein meaA [KO:K14447] [EC:5.4.99.63]
QF092_15420  acyl-CoA dehydrogenase family protein [KO:K14448] [EC:1.3.8.12]
QF092_08900  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
QF092_14520  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
QF092_14495  L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
QF092_08915  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
QF092_07320  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
QF092_07345  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
QF092_07310  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
QF092_16120  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
QF092_16125  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
QF092_16135  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
QF092_07960  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
QF092_18170  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
QF092_05610  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
QF092_06365  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
QF092_08795  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
QF092_06515  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
QF092_10360  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
QF092_14525  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
QF092_04640  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
QF092_05600  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF092_05760  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF092_07125  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF092_07935  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF092_07995  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF092_08400  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF092_08410  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF092_19940  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QF092_11725  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
QF092_18445  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
QF092_18265  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
QF092_01070  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
QF092_01100  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
QF092_18255  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
QF092_19775  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
QF092_03490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF092_08975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF092_18260  gcvH; glycine cleavage system protein GcvH [KO:K02437]
QF092_11870  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
QF092_18900  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
QF092_01480  glycerate kinase [KO:K11529] [EC:2.7.1.165]
QF092_02510  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
QF092_13975  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
QF092_13965  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
QF092_13960  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
QF092_13955  formate dehydrogenase subunit gamma [KO:K00127]
QF092_07505  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
fyt00010  Glycolysis / Gluconeogenesis
fyt00020  Citrate cycle (TCA cycle)
fyt00030  Pentose phosphate pathway
fyt00053  Ascorbate and aldarate metabolism
fyt00071  Fatty acid degradation
fyt00230  Purine metabolism
fyt00250  Alanine, aspartate and glutamate metabolism
fyt00260  Glycine, serine and threonine metabolism
fyt00620  Pyruvate metabolism
fyt00710  Carbon fixation by Calvin cycle
fyt00750  Vitamin B6 metabolism
fyt00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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