KEGG   PATHWAY: gab00020
Entry
gab00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gossypium arboreum (tree cotton)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gab00020  Citrate cycle (TCA cycle)
gab00020

Module
gab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gab00020]
gab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gab00020]
gab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gab00020]
gab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gab00020]
gab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gab00020]
Other DBs
GO: 0006099
Organism
Gossypium arboreum (tree cotton) [GN:gab]
Gene
108471646  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
108453498  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
108489332  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
108480138  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
108479846  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
108476613  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
108460969  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
108479334  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
108479341  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
108453591  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
108456604  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
108453061  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
108487334  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
108454073  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like [KO:K00031] [EC:1.1.1.42]
108466014  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
108464309  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
108478319  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
108478181  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
108457706  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
108453036  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
108460196  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
108460198  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
108463589  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
108470317  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
108484046  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
108449923  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
108476075  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
108457062  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
108456762  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
108476383  probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108461431  probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108475413  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108451229  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108479251  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
108474320  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
108478243  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
108458328  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
108453042  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
108458623  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
33134349  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
33134361  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
108460437  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
108465790  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
108480091  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
108482748  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
108476189  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
108456316  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
108483397  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
108469458  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
108467047  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
108480222  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108453642  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
108458189  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
108453250  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108466979  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
108477269  phosphoenolpyruvate carboxykinase [ATP]-like isoform X1 [KO:K01610] [EC:4.1.1.49]
108472905  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
108476074  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
108473992  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
108479372  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
108478101  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
108450833  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
108465950  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
108480268  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
108479742  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
108486710  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
108486733  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
108457902  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
108453731  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic isoform X1 [KO:K00162] [EC:1.2.4.1]
108479664  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
108489353  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
108453149  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
108457806  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
108463860  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gab00010  Glycolysis / Gluconeogenesis
gab00053  Ascorbate and aldarate metabolism
gab00061  Fatty acid biosynthesis
gab00062  Fatty acid elongation
gab00071  Fatty acid degradation
gab00190  Oxidative phosphorylation
gab00220  Arginine biosynthesis
gab00250  Alanine, aspartate and glutamate metabolism
gab00280  Valine, leucine and isoleucine degradation
gab00350  Tyrosine metabolism
gab00470  D-Amino acid metabolism
gab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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