KEGG   PATHWAY: gbm00630
Entry
gbm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Citrifermentans bemidjiense
Class
Metabolism; Carbohydrate metabolism
Pathway map
gbm00630  Glyoxylate and dicarboxylate metabolism
gbm00630

Module
gbm_M00621  Glycine cleavage system [PATH:gbm00630]
Other DBs
GO: 0046487 0043648
Organism
Citrifermentans bemidjiense [GN:gbm]
Gene
Gbem_2900  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Gbem_1652  gltA-1; citrate synthase [KO:K01647] [EC:2.3.3.1]
Gbem_3905  gltA-2; citrate synthase [KO:K01647] [EC:2.3.3.1]
Gbem_2173  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Gbem_1294  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Gbem_1460  bamN; thiolase [KO:K00626] [EC:2.3.1.9]
Gbem_3574  thiolase [KO:K00626] [EC:2.3.1.9]
Gbem_2835  thiolase [KO:K00626] [EC:2.3.1.9]
Gbem_0558  mceE; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Gbem_2691  (R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit [KO:K01849] [EC:5.4.99.2]
Gbem_0559  (R)-methylmalonyl-CoA mutase, isobutyryl-CoA mutase-like catalytic subunit [KO:K01848] [EC:5.4.99.2]
Gbem_2906  lutD; D-lactate dehydrogenase, flavoprotein subunit, putative [KO:K00104] [EC:1.1.99.14]
Gbem_0564  larD; D-lactate dehydrogenase, flavoprotein subunit, putative [KO:K00104] [EC:1.1.99.14]
Gbem_2905  lutF; D-lactate dehydrogenase, CCG domain pair-containing subunit, putative [KO:K11473] [EC:1.1.99.14]
Gbem_0563  larF; D-lactate dehydrogenase, CCG domain pair-containing subunit, putative [KO:K11473] [EC:1.1.99.14]
Gbem_0351  ghr; glyoxalate/3-oxopropanoate/4-oxobutanoate reductase [KO:K18121] [EC:1.1.1.79 1.1.1.-]
Gbem_1648  hprA; hydroxypyruvate reductase, putative [KO:K00018] [EC:1.1.1.29]
Gbem_0766  HAD superfamily hydrolase [KO:K01091] [EC:3.1.3.18]
Gbem_2451  HAD superfamily hydrolase [KO:K01091] [EC:3.1.3.18]
Gbem_3077  glnA-1; glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Gbem_3079  glnA-2; glutamine synthetase, type III [KO:K01915] [EC:6.3.1.2]
Gbem_3102  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Gbem_0397  gcvP1; glycine cleavage system P protein, subunit 1 [KO:K00282] [EC:1.4.4.2]
Gbem_0398  gcvP2; glycine cleavage system P protein, subunit 2 [KO:K00283] [EC:1.4.4.2]
Gbem_0395  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Gbem_0706  lpdA-1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Gbem_0396  gcvH; glycine cleavage system lipoyl carrier protein GcvH [KO:K02437]
Gbem_1563  larG; lipoyl carrier protein LarG [KO:K02437]
Gbem_3609  glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
Gbem_2181  fdnG-3; cytoplasmic formate dehydrogenase, major subunit, selenocysteine-containing [KO:K00123] [EC:1.17.1.9]
Gbem_1575  fdnG-2; periplasmically oriented, membrane-bound formate dehydrogenase, major subunit, selenocysteine-containing [KO:K00123] [EC:1.17.1.9]
Gbem_1574  fdnH-2; periplasmically oriented, membrane-bound formate dehydrogenase, iron-sulfur cluster-binding subunit [KO:K00124]
Gbem_2266  fdnH-1; periplasmically oriented, membrane-bound formate dehydrogenase, iron-sulfur cluster-binding subunit [KO:K00124]
Gbem_2180  fdnH-3; cytoplasmic formate dehydrogenase, iron-sulfur cluster-binding subunit [KO:K00124]
Gbem_0665  cbcH; menaquinol oxidoreductase complex Cbc7, iron-sulfur cluster-binding subunit, putative [KO:K00124]
Gbem_1573  fdnI-2; periplasmically oriented, membrane-bound formate dehydrogenase, cytochrome b subunit [KO:K00127]
Gbem_3555  cyclase/hydrolase, putative [KO:K07130] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gbm00010  Glycolysis / Gluconeogenesis
gbm00020  Citrate cycle (TCA cycle)
gbm00030  Pentose phosphate pathway
gbm00053  Ascorbate and aldarate metabolism
gbm00071  Fatty acid degradation
gbm00230  Purine metabolism
gbm00250  Alanine, aspartate and glutamate metabolism
gbm00260  Glycine, serine and threonine metabolism
gbm00620  Pyruvate metabolism
gbm00710  Carbon fixation by Calvin cycle
gbm00750  Vitamin B6 metabolism
gbm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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