KEGG   PATHWAY: gtn00020
Entry
gtn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geobacillus thermodenitrificans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gtn00020  Citrate cycle (TCA cycle)
gtn00020

Module
gtn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gtn00020]
gtn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gtn00020]
gtn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gtn00020]
gtn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gtn00020]
gtn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gtn00020]
Other DBs
GO: 0006099
Organism
Geobacillus thermodenitrificans [GN:gtn]
Gene
GTNG_2660  Citrate synthase [KO:K01659] [EC:2.3.3.5]
GTNG_1206  Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GTNG_2659  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GTNG_0885  Oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
GTNG_0886  Dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
GTNG_0925  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GTNG_2308  Lipoamide dehydrogenase of 2-oxo acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
GTNG_1155  Pyruvate ferredoxin oxidoreductase, alpha subunit,putative [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GTNG_1156  Pyruvate synthase subunit porB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GTNG_1062  Succinyl-CoA synthetase (alpha subunit) [KO:K01902] [EC:6.2.1.5]
GTNG_1061  Succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
GTNG_2784  Succinyl-CoA, coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
GTNG_2600  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GTNG_2599  Iron-sulphur subunit of succinate dehydrogenasesubunit [KO:K00240] [EC:1.3.5.1]
GTNG_2601  Succinate dehydrogenase cytochrome b-558 [KO:K00241]
GTNG_0398  Fumarase [KO:K01676] [EC:4.2.1.2]
GTNG_0226  Fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
GTNG_2658  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GTNG_1250  Malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GTNG_0944  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GTNG_2751  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GTNG_3138  Pyruvate dehydrogenase E1 (lipoamide) alpha subunit [KO:K00161] [EC:1.2.4.1]
GTNG_0922  Pyruvate dehydrogenase (lipoamide)alpha subunit [KO:K00161] [EC:1.2.4.1]
GTNG_0923  Pyruvate dehydrogenase (lipoamide)beta subunit [KO:K00162] [EC:1.2.4.1]
GTNG_3137  Pyruvate dehydrogenase E1 (lipoamide) beta subunit [KO:K00162] [EC:1.2.4.1]
GTNG_3139  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
GTNG_0619  Pyruvate dehydrogenase E2 (dihydrolipoamideacetyltransferase) [KO:K00627] [EC:2.3.1.12]
GTNG_0924  Dihydrolipoyl acetyltransferase [KO:K00627] [EC:2.3.1.12]
GTNG_1717  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
GTNG_1718  porG; Gamma subunit of pyruvate oxidoreductase [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gtn00010  Glycolysis / Gluconeogenesis
gtn00053  Ascorbate and aldarate metabolism
gtn00061  Fatty acid biosynthesis
gtn00071  Fatty acid degradation
gtn00190  Oxidative phosphorylation
gtn00220  Arginine biosynthesis
gtn00250  Alanine, aspartate and glutamate metabolism
gtn00280  Valine, leucine and isoleucine degradation
gtn00350  Tyrosine metabolism
gtn00470  D-Amino acid metabolism
gtn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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