KEGG   PATHWAY: gza00020
Entry
gza00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geobacillus zalihae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gza00020  Citrate cycle (TCA cycle)
gza00020

Module
gza_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gza00020]
gza_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gza00020]
gza_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gza00020]
gza_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gza00020]
gza_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gza00020]
Other DBs
GO: 0006099
Organism
Geobacillus zalihae [GN:gza]
Gene
IC807_09895  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
IC807_02355  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
IC807_09890  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IC807_00785  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IC807_00790  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IC807_00965  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IC807_02760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IC807_08045  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IC807_02120  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IC807_02125  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IC807_01650  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IC807_01645  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IC807_09500  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IC807_09495  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IC807_09505  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
IC807_15810  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IC807_14895  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IC807_09885  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IC807_02795  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
IC807_01060  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IC807_10410  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
IC807_00950  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
IC807_12190  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
IC807_00955  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
IC807_12185  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
IC807_00960  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
IC807_02755  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
IC807_12195  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
IC807_17190  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gza00010  Glycolysis / Gluconeogenesis
gza00053  Ascorbate and aldarate metabolism
gza00061  Fatty acid biosynthesis
gza00071  Fatty acid degradation
gza00190  Oxidative phosphorylation
gza00220  Arginine biosynthesis
gza00250  Alanine, aspartate and glutamate metabolism
gza00280  Valine, leucine and isoleucine degradation
gza00350  Tyrosine metabolism
gza00470  D-Amino acid metabolism
gza00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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