KEGG   PATHWAY: haf00020
Entry
haf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halomonas sp. SF2003
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
haf00020  Citrate cycle (TCA cycle)
haf00020

Module
haf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:haf00020]
haf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:haf00020]
haf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:haf00020]
haf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:haf00020]
Other DBs
GO: 0006099
Organism
Halomonas sp. SF2003 [GN:haf]
Gene
C8233_08570  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C8233_08265  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
C8233_12860  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
C8233_16190  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C8233_14995  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C8233_08545  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C8233_08540  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C8233_08535  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C8233_05285  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C8233_08525  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C8233_08530  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C8233_17040  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
C8233_08555  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C8233_08550  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C8233_08565  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C8233_08560  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C8233_01280  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C8233_16585  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
C8233_15305  FAD-dependent oxidoreductase [KO:K00116] [EC:1.1.5.4]
C8233_06895  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
C8233_06890  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
C8233_15785  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C8233_13795  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C8233_13800  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
haf00010  Glycolysis / Gluconeogenesis
haf00053  Ascorbate and aldarate metabolism
haf00061  Fatty acid biosynthesis
haf00071  Fatty acid degradation
haf00190  Oxidative phosphorylation
haf00220  Arginine biosynthesis
haf00250  Alanine, aspartate and glutamate metabolism
haf00280  Valine, leucine and isoleucine degradation
haf00350  Tyrosine metabolism
haf00470  D-Amino acid metabolism
haf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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