KEGG   PATHWAY: hahs00020
Entry
hahs00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halanaeroarchaeum sp. HSR-CO
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hahs00020  Citrate cycle (TCA cycle)
hahs00020

Module
hahs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hahs00020]
hahs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hahs00020]
hahs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hahs00020]
hahs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hahs00020]
hahs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hahs00020]
Other DBs
GO: 0006099
Organism
Halanaeroarchaeum sp. HSR-CO [GN:hahs]
Gene
HSRCO_0369  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
HSRCO_0370  gltA2; Citrate synthase [KO:K01647] [EC:2.3.3.1]
HSRCO_0394  acnA; Aconitase A [KO:K01681] [EC:4.2.1.3]
HSRCO_2546  icd; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HSRCO_2691  lpd3; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component or related enzyme [KO:K00382] [EC:1.8.1.4]
HSRCO_0438  porA; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HSRCO_1097  porA4; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HSRCO_0439  porB; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HSRCO_1096  porB4; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HSRCO_0437  Ferredoxin [KO:K00176] [EC:1.2.7.3]
HSRCO_2267  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
HSRCO_2266  sucC; Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
HSRCO_0072  ach1; Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
HSRCO_2760  ach1-2; Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
HSRCO_2131  sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HSRCO_2132  frdB; Succinate dehydrogenase/fumarate reductase, Fe-Sprotein subunit [KO:K00240] [EC:1.3.5.1]
HSRCO_2134  sdhC; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
HSRCO_2133  sdhD; Succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
HSRCO_1594  fumC; Fumarase [KO:K01679] [EC:4.2.1.2]
HSRCO_0084  mdh; Malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HSRCO_2123  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HSRCO_2574  acoA3; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [KO:K00161] [EC:1.2.4.1]
HSRCO_2688  acoA4; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [KO:K00161] [EC:1.2.4.1]
HSRCO_2689  acoB3; Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component [KO:K00162] [EC:1.2.4.1]
HSRCO_0806  aceF2; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
HSRCO_2690  aceF3; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component or related enzyme [KO:K00627] [EC:2.3.1.12]
HSRCO_0828  porA3; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
HSRCO_1975  porA5; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit and gamma [KO:K00169] [EC:1.2.7.1]
HSRCO_0564  porB2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HSRCO_0827  porB3; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HSRCO_1974  porB5; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HSRCO_0830  porG2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
HSRCO_0562  porG; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00189] [EC:1.2.7.7 1.2.7.1]
HSRCO_0561  porD; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
HSRCO_0829  porD2; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hahs00010  Glycolysis / Gluconeogenesis
hahs00053  Ascorbate and aldarate metabolism
hahs00061  Fatty acid biosynthesis
hahs00071  Fatty acid degradation
hahs00190  Oxidative phosphorylation
hahs00220  Arginine biosynthesis
hahs00250  Alanine, aspartate and glutamate metabolism
hahs00280  Valine, leucine and isoleucine degradation
hahs00350  Tyrosine metabolism
hahs00470  D-Amino acid metabolism
hahs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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