KEGG   PATHWAY: hhs00020
Entry
hhs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Pantoea carbekii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hhs00020  Citrate cycle (TCA cycle)
hhs00020

Module
hhs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hhs00020]
hhs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hhs00020]
hhs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hhs00020]
hhs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hhs00020]
Other DBs
GO: 0006099
Organism
Candidatus Pantoea carbekii [GN:hhs]
Gene
HHS_07570  gltA; GltA protein [KO:K01647] [EC:2.3.3.1]
HHS_06280  acnA; AcnA protein [KO:K01681] [EC:4.2.1.3]
HHS_06690  icd; Icd protein [KO:K00031] [EC:1.1.1.42]
HHS_07520  sucA; SucA protein [KO:K00164] [EC:1.2.4.2]
HHS_07510  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
HHS_04630  lpdA; LpdA protein [KO:K00382] [EC:1.8.1.4]
HHS_07490  sucD; SucD protein [KO:K01902] [EC:6.2.1.5]
HHS_07500  sucC; SucC protein [KO:K01903] [EC:6.2.1.5]
HHS_07540  sdhA; SdhA protein [KO:K00239] [EC:1.3.5.1]
HHS_07530  sdhB; SdhB protein [KO:K00240] [EC:1.3.5.1]
HHS_07560  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
HHS_07550  sdhD; SdhD protein [KO:K00242]
HHS_06360  fumC; FumC protein [KO:K01679] [EC:4.2.1.2]
HHS_02690  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HHS_02030  pckA; PckA [KO:K01610] [EC:4.1.1.49]
HHS_04650  aceE; AceE protein [KO:K00163] [EC:1.2.4.1]
HHS_04640  aceF; AceF protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hhs00010  Glycolysis / Gluconeogenesis
hhs00053  Ascorbate and aldarate metabolism
hhs00061  Fatty acid biosynthesis
hhs00190  Oxidative phosphorylation
hhs00220  Arginine biosynthesis
hhs00250  Alanine, aspartate and glutamate metabolism
hhs00280  Valine, leucine and isoleucine degradation
hhs00350  Tyrosine metabolism
hhs00470  D-Amino acid metabolism
hhs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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