KEGG   PATHWAY: ini03008
Entry
ini03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Ipomoea nil (Japanese morning glory)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ini03008  Ribosome biogenesis in eukaryotes
ini03008

Organism
Ipomoea nil (Japanese morning glory) [GN:ini]
Gene
109182578  putative casein kinase II subunit beta-4 [KO:K03115]
109185385  putative casein kinase II subunit beta-4 [KO:K03115]
109153051  casein kinase II subunit beta-3-like [KO:K03115]
109156109  putative casein kinase II subunit beta-4 [KO:K03115]
109151913  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
109168918  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
109157181  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
109189227  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
109177880  casein kinase II subunit alpha-2-like [KO:K03097] [EC:2.7.11.1]
109169873  casein kinase II subunit alpha-2 [KO:K03097] [EC:2.7.11.1]
109177913  nucleolar protein 6 [KO:K14544]
109188969  uncharacterized protein DDB_G0283697 [KO:K14545]
109175968  uncharacterized LOC109175968 [KO:K14546]
109155115  WD repeat-containing protein 43-like [KO:K14546]
109170567  U3 small nucleolar RNA-associated protein 4-like [KO:K14548]
109149437  protein SLOW WALKER 1 [KO:K14549]
109159735  uncharacterized protein At3g06530 [KO:K14550]
109157147  WD repeat-containing protein 75 [KO:K14552]
109161047  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
109150606  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
109180872  U3 small nucleolar RNA-associated protein 21 homolog [KO:K14554]
109181511  transducin beta-like protein 3 [KO:K14555]
109172744  WD repeat-containing protein 3 [KO:K14556]
109169651  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
109179699  periodic tryptophan protein 2 homolog [KO:K14558]
109179994  U3 small nucleolar ribonucleoprotein protein MPP10-like [KO:K14559]
109190898  U3 small nucleolar ribonucleoprotein protein MPP10-like [KO:K14559]
109189244  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
109150799  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
109161054  mediator of RNA polymerase II transcription subunit 36a-like [KO:K14563] [EC:2.1.1.-]
109173124  mediator of RNA polymerase II transcription subunit 36a-like [KO:K14563] [EC:2.1.1.-]
109173126  mediator of RNA polymerase II transcription subunit 36a [KO:K14563] [EC:2.1.1.-]
109192441  PnD21-22; nucleolar protein 56-like [KO:K14564]
109186777  nucleolar protein 56-like [KO:K14564]
109153817  probable nucleolar protein 5-2 [KO:K14565]
109165762  probable nucleolar protein 5-2 [KO:K14565]
109157718  NHP2-like protein 1 [KO:K12845]
109180947  NHP2-like protein 1 [KO:K12845]
109172507  H/ACA ribonucleoprotein complex subunit 4-like [KO:K11131] [EC:5.4.99.-]
109172517  H/ACA ribonucleoprotein complex subunit 4-like [KO:K11131] [EC:5.4.99.-]
109162790  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
109161878  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [KO:K11128]
109161497  H/ACA ribonucleoprotein complex subunit 3-like protein [KO:K11130]
109156030  rRNA-processing protein FCF1 homolog [KO:K14566]
109176249  uncharacterized protein C57A7.06-like [KO:K14567]
109172798  uncharacterized protein C57A7.06-like [KO:K14567]
109182399  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
109172640  ribosome biogenesis protein BMS1 homolog [KO:K14569]
109152165  RNA cytidine acetyltransferase 1-like [KO:K14521] [EC:2.3.1.-]
109152166  RNA cytidine acetyltransferase 1-like [KO:K14521] [EC:2.3.1.-]
109171332  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
109174617  uncharacterized LOC109174617 [KO:K01164] [EC:3.1.26.5]
109174328  uncharacterized LOC109174328 [KO:K01164] [EC:3.1.26.5]
109163969  ribonucleases P/MRP protein subunit POP1-like [KO:K01164] [EC:3.1.26.5]
109155890  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
109182297  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
109175057  probable ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
109172840  uncharacterized LOC109172840 [KO:K03539] [EC:3.1.26.5]
109177668  small RNA degrading nuclease 3-like [KO:K14570] [EC:3.1.-.-]
109160337  small RNA degrading nuclease 5 [KO:K14570] [EC:3.1.-.-]
109173638  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
109170026  5'-3' exoribonuclease 3 [KO:K12619] [EC:3.1.13.-]
109156063  nucleolar GTP-binding protein 1 [KO:K06943]
109188868  nucleolar GTP-binding protein 1-like [KO:K06943]
109166815  nuclear/nucleolar GTPase 2 [KO:K14537]
109190587  guanine nucleotide-binding protein-like NSN1 [KO:K14538]
109177348  guanine nucleotide-binding protein-like NSN1 [KO:K14538]
109182145  cell division control protein 48 homolog C [KO:K14571]
109156359  midasin [KO:K14572]
109178822  RNA-binding protein 28-like [KO:K14573]
109149396  RNA-binding protein 28 [KO:K14573]
109189770  20S-pre-rRNA D-site endonuclease nob1 [KO:K11883]
109174649  GTP-binding nuclear protein Ran-3 [KO:K07936]
109162934  GTP-binding nuclear protein Ran/TC4 [KO:K07936]
109189183  protein EXPORTIN 1A-like [KO:K14290]
109193338  protein EXPORTIN 1A [KO:K14290]
109170881  60S ribosomal export protein NMD3 [KO:K07562]
109191147  eukaryotic translation initiation factor 6-2 [KO:K03264]
109174863  eukaryotic translation initiation factor 6-2-like [KO:K03264]
109169691  ribosome maturation protein SBDS-like [KO:K14574]
109159683  ribosome maturation protein SBDS-like [KO:K14574]
109176490  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
109192965  GTPase LSG1-2 [KO:K14539] [EC:3.6.1.-]
109188734  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
109193577  serine/threonine-protein kinase RIO1-like [KO:K07178] [EC:2.7.11.1]
109170650  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
29200443  rrn16; 16S ribosomal RNA [KO:K01979]
29200428  rrn23; 23S ribosomal RNA [KO:K01982]
29200424  rrn5; 5 ribosomal RNA [KO:K01981]
29200440  rrn5; 5 ribosomal RNA [KO:K01981]
29200390  rrn5; 5S ribosomal RNA [KO:K01981]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ini03010  Ribosome
KO pathway
ko03008   
LinkDB

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