KEGG   PATHWAY: kom00020
Entry
kom00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella michiganensis M1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kom00020  Citrate cycle (TCA cycle)
kom00020

Module
kom_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kom00020]
kom_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kom00020]
kom_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kom00020]
kom_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kom00020]
kom_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kom00020]
Other DBs
GO: 0006099
Organism
Klebsiella michiganensis M1 [GN:kom]
Gene
HR38_23340  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HR38_13340  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HR38_16705  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HR38_09310  hydratase [KO:K01681] [EC:4.2.1.3]
HR38_09805  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HR38_16095  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HR38_13365  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
HR38_13370  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
HR38_09785  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HR38_18775  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HR38_13380  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
HR38_13375  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
HR38_13355  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
HR38_13360  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
HR38_13345  sdhC; succinate dehydrogenase [KO:K00241]
HR38_13350  sdhD; succinate dehydrogenase [KO:K00242]
HR38_07470  fumarate reductase [KO:K00244] [EC:1.3.5.1]
HR38_07465  fumarate reductase [KO:K00245] [EC:1.3.5.1]
HR38_07460  fumarate reductase [KO:K00246]
HR38_07455  fumarate reductase [KO:K00247]
HR38_20035  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HR38_20200  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HR38_13415  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HR38_20195  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HR38_21040  hypothetical protein [KO:K01675] [EC:4.2.1.2]
HR38_02545  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HR38_24200  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HR38_19985  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HR38_21670  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HR38_03240  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HR38_09775  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
HR38_09780  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
HR38_18780  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
HR38_17425  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
HR38_23000  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kom00010  Glycolysis / Gluconeogenesis
kom00053  Ascorbate and aldarate metabolism
kom00061  Fatty acid biosynthesis
kom00071  Fatty acid degradation
kom00190  Oxidative phosphorylation
kom00220  Arginine biosynthesis
kom00250  Alanine, aspartate and glutamate metabolism
kom00280  Valine, leucine and isoleucine degradation
kom00350  Tyrosine metabolism
kom00470  D-Amino acid metabolism
kom00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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