KEGG   PATHWAY: kpk00020
Entry
kpk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella variicola KP5-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpk00020  Citrate cycle (TCA cycle)
kpk00020

Module
kpk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kpk00020]
kpk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kpk00020]
kpk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kpk00020]
kpk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kpk00020]
kpk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kpk00020]
Other DBs
GO: 0006099
Organism
Klebsiella variicola KP5-1 [GN:kpk]
Gene
A593_18125  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
A593_16840  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
A593_14495  hydratase [KO:K01681] [EC:4.2.1.3]
A593_21105  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A593_15030  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A593_20180  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A593_18150  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
A593_18155  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A593_15720  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A593_15010  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A593_18165  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
A593_18160  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
A593_18140  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
A593_18145  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
A593_18130  sdhC; succinate dehydrogenase [KO:K00241]
A593_18135  sdhD; succinate dehydrogenase [KO:K00242]
A593_12835  fumarate reductase [KO:K00244] [EC:1.3.5.1]
A593_12830  fumarate reductase [KO:K00245] [EC:1.3.5.1]
A593_12825  fumarate reductase [KO:K00246]
A593_12820  fumarate reductase [KO:K00247]
A593_22130  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A593_22285  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A593_22135  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A593_25715  hypothetical protein [KO:K01675] [EC:4.2.1.2]
A593_08410  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A593_03005  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A593_22320  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A593_09060  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A593_00965  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A593_15000  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
A593_15725  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
A593_15005  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
A593_21730  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
A593_02110  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kpk00010  Glycolysis / Gluconeogenesis
kpk00053  Ascorbate and aldarate metabolism
kpk00061  Fatty acid biosynthesis
kpk00071  Fatty acid degradation
kpk00190  Oxidative phosphorylation
kpk00220  Arginine biosynthesis
kpk00250  Alanine, aspartate and glutamate metabolism
kpk00280  Valine, leucine and isoleucine degradation
kpk00350  Tyrosine metabolism
kpk00470  D-Amino acid metabolism
kpk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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