KEGG   PATHWAY: krh00020
Entry
krh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kocuria rhizophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
krh00020  Citrate cycle (TCA cycle)
krh00020

Module
krh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:krh00020]
krh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:krh00020]
krh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:krh00020]
krh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:krh00020]
krh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:krh00020]
Other DBs
GO: 0006099
Organism
Kocuria rhizophila [GN:krh]
Gene
KRH_08260  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
KRH_15320  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
KRH_14150  acn; aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
KRH_08030  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KRH_09450  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KRH_14410  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KRH_18170  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
KRH_18180  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
KRH_17920  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KRH_07520  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KRH_02600  putative succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
KRH_17930  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
KRH_07510  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
KRH_07530  sdhC; succinate dehydrogenase cytochrome b subunit [KO:K00241]
KRH_17900  sdhC; succinate dehydrogenase cytochrome b subunit [KO:K00241]
KRH_02610  hypothetical protein [KO:K00241]
KRH_17910  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
KRH_17590  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
KRH_08010  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KRH_10160  mqo; putative malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KRH_15040  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KRH_03260  pckG; GTP-dependent phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
KRH_10810  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
KRH_14420  dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
krh00010  Glycolysis / Gluconeogenesis
krh00053  Ascorbate and aldarate metabolism
krh00061  Fatty acid biosynthesis
krh00071  Fatty acid degradation
krh00190  Oxidative phosphorylation
krh00220  Arginine biosynthesis
krh00250  Alanine, aspartate and glutamate metabolism
krh00280  Valine, leucine and isoleucine degradation
krh00350  Tyrosine metabolism
krh00470  D-Amino acid metabolism
krh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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