KEGG   PATHWAY: lagg00630
Entry
lagg00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Roseibium aggregatum
Class
Metabolism; Carbohydrate metabolism
Pathway map
lagg00630  Glyoxylate and dicarboxylate metabolism
lagg00630

Module
lagg_M00621  Glycine cleavage system [PATH:lagg00630]
lagg_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:lagg00630]
Other DBs
GO: 0046487 0043648
Organism
Roseibium aggregatum [GN:lagg]
Gene
B0E33_12485  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
B0E33_14000  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
B0E33_09805  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
B0E33_14570  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
B0E33_05515  malate synthase G [KO:K01638] [EC:2.3.3.9]
B0E33_09070  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B0E33_11725  citrate synthase [KO:K01647] [EC:2.3.3.1]
B0E33_11730  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
B0E33_25735  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
B0E33_13800  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
B0E33_13805  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B0E33_11535  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B0E33_07320  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B0E33_29275  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B0E33_13015  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B0E33_05195  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B0E33_09830  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B0E33_13010  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
B0E33_17160  phosphate acetyltransferase [KO:K17865] [EC:4.2.1.55]
B0E33_06575  acyl dehydratase [KO:K17865] [EC:4.2.1.55]
B0E33_14250  crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
B0E33_25570  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
B0E33_14255  protein meaA [KO:K14447] [EC:5.4.99.63]
B0E33_14815  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
B0E33_14110  hypothetical protein [KO:K14449] [EC:4.2.1.148]
B0E33_26575  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
B0E33_24855  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
B0E33_24835  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
B0E33_23585  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
B0E33_23590  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
B0E33_06800  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
B0E33_06795  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
B0E33_06780  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
B0E33_12290  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
B0E33_16785  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
B0E33_24790  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
B0E33_24860  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
B0E33_22850  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
B0E33_01010  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
B0E33_02645  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
B0E33_07030  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
B0E33_10855  aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
B0E33_07230  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B0E33_07240  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B0E33_25390  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
B0E33_17415  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
B0E33_05040  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
B0E33_01805  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
B0E33_06300  glycine dehydrogenase (aminomethyl-transferring) [KO:K00282] [EC:1.4.4.2]
B0E33_06295  glycine dehydrogenase (aminomethyl-transferring) [KO:K00283] [EC:1.4.4.2]
B0E33_06315  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
B0E33_26200  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B0E33_09030  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B0E33_06310  glycine cleavage system protein H [KO:K02437]
B0E33_20375  glycerate kinase [KO:K11529] [EC:2.7.1.165]
B0E33_17170  glycerate kinase [KO:K11529] [EC:2.7.1.165]
B0E33_14740  glycerate kinase [KO:K11529] [EC:2.7.1.165]
B0E33_20365  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
B0E33_20370  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
B0E33_21835  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
B0E33_22665  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
B0E33_04650  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
B0E33_22675  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
B0E33_17505  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
B0E33_04655  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
B0E33_17510  formate dehydrogenase [KO:K00124]
B0E33_22680  formate dehydrogenase [KO:K00124]
B0E33_17515  formate dehydrogenase subunit gamma [KO:K00127]
B0E33_22685  formate dehydrogenase subunit gamma [KO:K00127]
B0E33_25765  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
B0E33_07445  arylformamidase [KO:K07130] [EC:3.5.1.9]
B0E33_11575  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B0E33_04255  formamidase [KO:K01455] [EC:3.5.1.49]
B0E33_17560  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
B0E33_10850  formiminoglutamase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lagg00010  Glycolysis / Gluconeogenesis
lagg00020  Citrate cycle (TCA cycle)
lagg00030  Pentose phosphate pathway
lagg00053  Ascorbate and aldarate metabolism
lagg00071  Fatty acid degradation
lagg00230  Purine metabolism
lagg00250  Alanine, aspartate and glutamate metabolism
lagg00260  Glycine, serine and threonine metabolism
lagg00620  Pyruvate metabolism
lagg00710  Carbon fixation by Calvin cycle
lagg00750  Vitamin B6 metabolism
lagg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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