KEGG   PATHWAY: lbb00020
Entry
lbb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lycium barbarum (goji berry)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lbb00020  Citrate cycle (TCA cycle)
lbb00020

Module
lbb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lbb00020]
lbb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lbb00020]
lbb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lbb00020]
Other DBs
GO: 0006099
Organism
Lycium barbarum (goji berry) [GN:lbb]
Gene
132636566  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
132645065  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
132614682  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
132598500  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
132604496  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
132640329  ATP-citrate synthase beta chain protein 2-like isoform X1 [KO:K01648] [EC:2.3.3.8]
132641091  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
132626713  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
132616726  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
132617880  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
132636643  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
132614311  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
132622012  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
132624788  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
132599390  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
132622029  3-isopropylmalate dehydrogenase, chloroplastic [KO:K00030] [EC:1.1.1.41]
132606053  3-isopropylmalate dehydrogenase, chloroplastic-like isoform X1 [KO:K00030] [EC:1.1.1.41]
132623750  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
132606678  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
132615740  uncharacterized protein LOC132615740 isoform X1 [KO:K00164] [EC:1.2.4.2]
132640175  uncharacterized protein LOC132640175 [KO:K00164] [EC:1.2.4.2]
132616629  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
132636335  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
132598429  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
132604479  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
132640319  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
132640331  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
132621618  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
132625484  succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
132607776  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
132624908  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
132615065  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
132615314  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
132621603  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [KO:K00235] [EC:1.3.5.1]
132605578  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
132608826  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
132645761  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
132609046  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
132610033  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
132598891  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
132632941  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
132619152  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
132636434  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
132622250  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
132602517  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
132627678  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
132613769  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
132620487  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
132641440  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
132632308  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
132602512  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
132602959  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
132641321  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
132609209  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic isoform X1 [KO:K00162] [EC:1.2.4.1]
132616197  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
132616672  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
132602813  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
132641793  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
132627124  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lbb00010  Glycolysis / Gluconeogenesis
lbb00053  Ascorbate and aldarate metabolism
lbb00061  Fatty acid biosynthesis
lbb00062  Fatty acid elongation
lbb00071  Fatty acid degradation
lbb00190  Oxidative phosphorylation
lbb00220  Arginine biosynthesis
lbb00250  Alanine, aspartate and glutamate metabolism
lbb00280  Valine, leucine and isoleucine degradation
lbb00350  Tyrosine metabolism
lbb00470  D-Amino acid metabolism
lbb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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