KEGG   PATHWAY: leh00020
Entry
leh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leclercia sp. LSNIH3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
leh00020  Citrate cycle (TCA cycle)
leh00020

Module
leh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:leh00020]
leh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:leh00020]
leh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:leh00020]
leh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:leh00020]
leh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:leh00020]
Other DBs
GO: 0006099
Organism
Leclercia sp. LSNIH3 [GN:leh]
Gene
C3F35_05125  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
C3F35_21820  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C3F35_03320  aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C3F35_07880  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C3F35_02530  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
C3F35_05095  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C3F35_05090  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C3F35_07900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3F35_05080  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C3F35_05085  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C3F35_05105  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C3F35_05100  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C3F35_05115  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
C3F35_05110  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C3F35_09825  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
C3F35_09830  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
C3F35_09835  fumarate reductase subunit FrdC [KO:K00246]
C3F35_09840  fumarate reductase subunit FrdD [KO:K00247]
C3F35_01430  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C3F35_01425  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C3F35_01810  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
C3F35_14355  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C3F35_19195  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C3F35_13555  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C3F35_07910  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C3F35_07905  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
C3F35_22245  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
leh00010  Glycolysis / Gluconeogenesis
leh00053  Ascorbate and aldarate metabolism
leh00061  Fatty acid biosynthesis
leh00071  Fatty acid degradation
leh00190  Oxidative phosphorylation
leh00220  Arginine biosynthesis
leh00250  Alanine, aspartate and glutamate metabolism
leh00280  Valine, leucine and isoleucine degradation
leh00350  Tyrosine metabolism
leh00470  D-Amino acid metabolism
leh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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