KEGG   PATHWAY: lpak00240
Entry
lpak00240                   Pathway                                
Name
Pyrimidine metabolism - Lysinibacillus pakistanensis
Class
Metabolism; Nucleotide metabolism
Pathway map
lpak00240  Pyrimidine metabolism
lpak00240

Module
lpak_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:lpak00240]
lpak_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:lpak00240]
lpak_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lpak00240]
lpak_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:lpak00240]
Other DBs
GO: 0006220 0006213
Organism
Lysinibacillus pakistanensis [GN:lpak]
Gene
GDS87_04945  carB; carbamoyl-phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
GDS87_04940  carA; glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit [KO:K01956] [EC:6.3.5.5]
GDS87_04930  aspartate carbamoyltransferase catalytic subunit [KO:K00609] [EC:2.1.3.2]
GDS87_04935  dihydroorotase [KO:K01465] [EC:3.5.2.3]
GDS87_04955  dihydroorotate dehydrogenase [KO:K17828] [EC:1.3.1.14]
GDS87_04950  dihydroorotate dehydrogenase electron transfer subunit [KO:K02823]
GDS87_04965  orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
GDS87_04960  pyrF; orotidine-5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
GDS87_05505  UMP kinase [KO:K09903] [EC:2.7.4.22]
GDS87_07480  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
GDS87_17095  maf; septum formation protein Maf [KO:K06287] [EC:3.6.1.-]
GDS87_02780  CTP synthase [KO:K01937] [EC:6.3.4.2]
GDS87_07415  (d)CMP kinase [KO:K00945] [EC:2.7.4.25]
GDS87_10100  AAA family ATPase [KO:K00876] [EC:2.7.1.48]
GDS87_01825  uridine kinase [KO:K00876] [EC:2.7.1.48]
GDS87_16600  uridine kinase [KO:K00876] [EC:2.7.1.48]
GDS87_19300  bifunctional metallophosphatase/5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
GDS87_02915  uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
GDS87_04915  pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR [KO:K02825] [EC:2.4.2.9]
GDS87_07085  bifunctional metallophosphatase/5'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
GDS87_22030  bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
GDS87_05735  TIGR00282 family metallophosphoesterase [KO:K09769] [EC:3.1.4.16]
GDS87_16875  pseudouridine-5-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
GDS87_06220  thymidine phosphorylase [KO:K00756] [EC:2.4.2.2]
GDS87_08315  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
GDS87_16080  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
GDS87_15455  vitamin B12-dependent ribonucleotide reductase [KO:K00525] [EC:1.17.4.1]
GDS87_15465  ribonucleotide reductase [KO:K00525] [EC:1.17.4.1]
GDS87_06945  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
GDS87_06950  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
GDS87_00175  deoxynucleoside kinase [KO:K15519] [EC:2.7.1.76 2.7.1.74]
GDS87_16505  ComE operon protein 2 [KO:K01493] [EC:3.5.4.12]
GDS87_00280  dTMP kinase [KO:K00943] [EC:2.7.4.9]
GDS87_06955  dUTP diphosphatase [KO:K01520] [EC:3.6.1.23]
GDS87_02855  thymidine kinase [KO:K00857] [EC:2.7.1.21]
GDS87_11355  thymidylate synthase [KO:K00560] [EC:2.1.1.45]
GDS87_07710  NAD(P)-binding protein [KO:K17722] [EC:1.3.1.1]
GDS87_07715  preA; NAD-dependent dihydropyrimidine dehydrogenase subunit PreA [KO:K17723] [EC:1.3.1.1]
GDS87_07705  hydA; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
GDS87_07700  hydantoinase/carbamoylase family amidase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
lpak00030  Pentose phosphate pathway
lpak00220  Arginine biosynthesis
lpak00250  Alanine, aspartate and glutamate metabolism
lpak00280  Valine, leucine and isoleucine degradation
lpak00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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