KEGG   PATHWAY: lpop00020
Entry
lpop00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Lonsdalea populi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lpop00020  Citrate cycle (TCA cycle)
lpop00020

Module
lpop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lpop00020]
lpop_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lpop00020]
lpop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lpop00020]
lpop_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lpop00020]
lpop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lpop00020]
Other DBs
GO: 0006099
Organism
Lonsdalea populi [GN:lpop]
Gene
I6N93_01185  citrate synthase [KO:K01647] [EC:2.3.3.1]
I6N93_05515  citrate synthase [KO:K01647] [EC:2.3.3.1]
I6N93_02575  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I6N93_08550  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I6N93_05540  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I6N93_05545  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
I6N93_02555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6N93_05555  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
I6N93_05550  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
I6N93_05530  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I6N93_05535  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I6N93_05520  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
I6N93_05525  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
I6N93_01750  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
I6N93_01745  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
I6N93_01740  frdC; fumarate reductase subunit FrdC [KO:K00246]
I6N93_01735  frdD; fumarate reductase subunit FrdD [KO:K00247]
I6N93_12650  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I6N93_07720  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I6N93_14105  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6N93_11195  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
I6N93_01215  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
I6N93_02545  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
I6N93_02550  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
I6N93_13445  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lpop00010  Glycolysis / Gluconeogenesis
lpop00053  Ascorbate and aldarate metabolism
lpop00061  Fatty acid biosynthesis
lpop00071  Fatty acid degradation
lpop00190  Oxidative phosphorylation
lpop00220  Arginine biosynthesis
lpop00250  Alanine, aspartate and glutamate metabolism
lpop00280  Valine, leucine and isoleucine degradation
lpop00350  Tyrosine metabolism
lpop00470  D-Amino acid metabolism
lpop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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