KEGG   PATHWAY: lsd00020
Entry
lsd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Litorilituus sediminis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lsd00020  Citrate cycle (TCA cycle)
lsd00020

Module
lsd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lsd00020]
lsd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lsd00020]
lsd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lsd00020]
lsd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lsd00020]
lsd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lsd00020]
Other DBs
GO: 0006099
Organism
Litorilituus sediminis [GN:lsd]
Gene
EMK97_16475  citrate synthase [KO:K01647] [EC:2.3.3.1]
EMK97_03950  citrate synthase [KO:K01647] [EC:2.3.3.1]
EMK97_10140  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EMK97_10145  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EMK97_00950  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EMK97_00955  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EMK97_18545  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
EMK97_03925  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EMK97_03920  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EMK97_10230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EMK97_03910  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EMK97_03915  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EMK97_03935  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EMK97_03930  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EMK97_03945  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EMK97_03940  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EMK97_18200  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EMK97_04065  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EMK97_15140  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EMK97_09440  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EMK97_10240  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EMK97_10235  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lsd00010  Glycolysis / Gluconeogenesis
lsd00061  Fatty acid biosynthesis
lsd00071  Fatty acid degradation
lsd00190  Oxidative phosphorylation
lsd00220  Arginine biosynthesis
lsd00250  Alanine, aspartate and glutamate metabolism
lsd00280  Valine, leucine and isoleucine degradation
lsd00350  Tyrosine metabolism
lsd00470  D-Amino acid metabolism
lsd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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