KEGG   PATHWAY: lww00030
Entry
lww00030                    Pathway                                
Name
Pentose phosphate pathway - Leptonychotes weddellii (Weddell seal)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lww00030  Pentose phosphate pathway
lww00030

Module
lww_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:lww00030]
lww_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lww00030]
lww_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lww00030]
lww_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lww00030]
Other DBs
GO: 0006098
Organism
Leptonychotes weddellii (Weddell seal) [GN:lww]
Gene
102744599  GPI; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
102739837  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
102750537  G6PD; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
102745943  PGLS; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
102743913  H6PD; GDH/6PGL endoplasmic bifunctional protein isoform X1 [KO:K13937] [EC:1.1.1.47 3.1.1.31]
102749800  PGD; 6-phosphogluconate dehydrogenase, decarboxylating isoform X1 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
102750803  RPE; ribulose-phosphate 3-epimerase isoform X1 [KO:K01783] [EC:5.1.3.1]
102744454  ribulose-phosphate 3-epimerase-like [KO:K01783] [EC:5.1.3.1]
102726042  TKTL2; transketolase-like protein 2 isoform X2 [KO:K00615] [EC:2.2.1.1]
102750487  TKT; transketolase [KO:K00615] [EC:2.2.1.1]
102746495  TKTL1; transketolase-like protein 1 [KO:K00615] [EC:2.2.1.1]
102737004  TALDO1; transaldolase [KO:K00616] [EC:2.2.1.2]
102733489  RPIA; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
102739197  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
102744884  SHPK; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
102741994  DERA; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
102735712  LOW QUALITY PROTEIN: deoxyribose-phosphate aldolase-like [KO:K01619] [EC:4.1.2.4]
102730186  ribokinase [KO:K00852] [EC:2.7.1.15]
102750269  ribokinase-like [KO:K00852] [EC:2.7.1.15]
102739406  PGM1; phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
102737164  PGM2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
102743701  PRPS2; ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
102741852  PRPS1L1; ribose-phosphate pyrophosphokinase 3 [KO:K00948] [EC:2.7.6.1]
102732457  RGN; regucalcin [KO:K01053] [EC:3.1.1.17]
102739918  IDNK; probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
102726771  GLYCTK; glycerate kinase [KO:K11529] [EC:2.7.1.165]
102746366  ALDOC; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
102730999  ALDOB; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
102743284  fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
102737217  FBP1; fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
102737518  FBP2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
102739782  ATP-dependent 6-phosphofructokinase, platelet type [KO:K00850] [EC:2.7.1.11]
102737641  PFKM; ATP-dependent 6-phosphofructokinase, muscle type [KO:K00850] [EC:2.7.1.11]
102746046  PFKL; ATP-dependent 6-phosphofructokinase, liver type isoform X2 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
lww00010  Glycolysis / Gluconeogenesis
lww00040  Pentose and glucuronate interconversions
lww00052  Galactose metabolism
lww00230  Purine metabolism
lww00240  Pyrimidine metabolism
lww00340  Histidine metabolism
lww00630  Glyoxylate and dicarboxylate metabolism
lww00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system