KEGG   PATHWAY: lyd00230
Entry
lyd00230                    Pathway                                
Name
Purine metabolism - Protaetiibacter intestinalis
Class
Metabolism; Nucleotide metabolism
Pathway map
lyd00230  Purine metabolism
lyd00230

Module
lyd_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lyd00230]
lyd_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:lyd00230]
lyd_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:lyd00230]
lyd_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:lyd00230]
lyd_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lyd00230]
Other DBs
GO: 0006163 0042278
Organism
Protaetiibacter intestinalis [GN:lyd]
Gene
D7I47_06780  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
D7I47_09020  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
D7I47_05210  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
D7I47_05230  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
D7I47_03895  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
D7I47_05295  purL; phosphoribosylformylglycinamidine synthase subunit PurL [KO:K23269] [EC:6.3.5.3]
D7I47_05255  phosphoribosylformylglycinamidine synthase subunit PurS [KO:K23264] [EC:6.3.5.3]
D7I47_05260  purQ; phosphoribosylformylglycinamidine synthase subunit PurQ [KO:K23265] [EC:6.3.5.3 3.5.1.2]
D7I47_05205  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
D7I47_08695  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
D7I47_08700  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
D7I47_05235  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
D7I47_05685  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
D7I47_03890  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH [KO:K00602] [EC:2.1.2.3 3.5.4.10]
D7I47_14345  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
D7I47_05105  ExeM/NucH family extracellular endonuclease [KO:K01081] [EC:3.1.3.5]
D7I47_05475  HAD family hydrolase [KO:K02566] [EC:3.1.3.5]
D7I47_08610  purine-nucleoside phosphorylase [KO:K03783] [EC:2.4.2.1]
D7I47_04995  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
D7I47_04030  GuaB3 family IMP dehydrogenase-related protein [KO:K00088] [EC:1.1.1.205]
D7I47_04040  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
D7I47_00970  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
D7I47_10850  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
D7I47_04000  glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
D7I47_11050  GuaB1 family IMP dehydrogenase-related protein [KO:K26110] [EC:1.7.1.7]
D7I47_12640  guaD; guanine deaminase [KO:K01487] [EC:3.5.4.3]
D7I47_13095  guanylate kinase [KO:K00942] [EC:2.7.4.8]
D7I47_02825  ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
D7I47_02820  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
D7I47_12170  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
D7I47_13230  bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
D7I47_04580  GTP pyrophosphokinase family protein [KO:K07816] [EC:2.7.6.5]
D7I47_05345  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
D7I47_08580  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
D7I47_04230  adenylate kinase [KO:K00939] [EC:2.7.4.3]
D7I47_07175  adenylate kinase [KO:K00939] [EC:2.7.4.3]
D7I47_10305  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
D7I47_13290  HIT domain-containing protein [KO:K19710] [EC:2.7.7.53]
D7I47_03325  urease subunit alpha [KO:K01428] [EC:3.5.1.5]
D7I47_03320  ureB; urease subunit beta [KO:K01429] [EC:3.5.1.5]
D7I47_03315  urease subunit gamma [KO:K01430] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
lyd00030  Pentose phosphate pathway
lyd00220  Arginine biosynthesis
lyd00250  Alanine, aspartate and glutamate metabolism
lyd00260  Glycine, serine and threonine metabolism
lyd00340  Histidine metabolism
lyd00630  Glyoxylate and dicarboxylate metabolism
lyd00730  Thiamine metabolism
lyd00740  Riboflavin metabolism
lyd00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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