KEGG   PATHWAY: lyh00230
Entry
lyh00230                    Pathway                                
Name
Purine metabolism - Lysinibacter sp. HNR
Class
Metabolism; Nucleotide metabolism
Pathway map
lyh00230  Purine metabolism
lyh00230

Module
lyh_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lyh00230]
lyh_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:lyh00230]
lyh_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:lyh00230]
lyh_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lyh00230]
Other DBs
GO: 0006163 0042278
Organism
Lysinibacter sp. HNR [GN:lyh]
Gene
FrondiHNR_00850  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
FrondiHNR_01040  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
FrondiHNR_04470  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
FrondiHNR_02110  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
FrondiHNR_02090  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
FrondiHNR_03575  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
FrondiHNR_01970  purL; phosphoribosylformylglycinamidine synthase subunit PurL [KO:K23269] [EC:6.3.5.3]
FrondiHNR_02050  purS; phosphoribosylformylglycinamidine synthase subunit PurS [KO:K23264] [EC:6.3.5.3]
FrondiHNR_02045  purQ; phosphoribosylformylglycinamidine synthase subunit PurQ [KO:K23265] [EC:6.3.5.3 3.5.1.2]
FrondiHNR_02115  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
FrondiHNR_03780  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
FrondiHNR_03815  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
FrondiHNR_12905  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
FrondiHNR_03580  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
FrondiHNR_01020  HAD-IIA family hydrolase [KO:K02566] [EC:3.1.3.5]
FrondiHNR_11295  purine-nucleoside phosphorylase [KO:K03783] [EC:2.4.2.1]
FrondiHNR_10175  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
FrondiHNR_03505  GuaB3 family IMP dehydrogenase-related protein [KO:K00088] [EC:1.1.1.205]
FrondiHNR_09540  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
FrondiHNR_07205  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
FrondiHNR_10310  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
FrondiHNR_03530  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
FrondiHNR_10840  GuaB1 family IMP dehydrogenase-related protein [KO:K26110] [EC:1.7.1.7]
FrondiHNR_04040  nucleoside deaminase [KO:K01487] [EC:3.5.4.3]
FrondiHNR_07240  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
FrondiHNR_11850  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
FrondiHNR_11845  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
FrondiHNR_00865  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
FrondiHNR_08770  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
FrondiHNR_00535  dgt; dNTP triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
FrondiHNR_07360  bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
FrondiHNR_09890  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
FrondiHNR_09955  GTP pyrophosphokinase family protein [KO:K07816] [EC:2.7.6.5]
FrondiHNR_12085  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
FrondiHNR_11370  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
FrondiHNR_11035  adenine deaminase C-terminal domain-containing protein [KO:K01486] [EC:3.5.4.2]
FrondiHNR_09725  adenylate kinase [KO:K00939] [EC:2.7.4.3]
FrondiHNR_07400  HIT domain-containing protein [KO:K19710] [EC:2.7.7.53]
FrondiHNR_04010  carbamate kinase [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
lyh00030  Pentose phosphate pathway
lyh00220  Arginine biosynthesis
lyh00250  Alanine, aspartate and glutamate metabolism
lyh00260  Glycine, serine and threonine metabolism
lyh00340  Histidine metabolism
lyh00630  Glyoxylate and dicarboxylate metabolism
lyh00730  Thiamine metabolism
lyh00740  Riboflavin metabolism
lyh00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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