KEGG   PATHWAY: macr00020
Entry
macr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Macrococcus sp. IME1552
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
macr00020  Citrate cycle (TCA cycle)
macr00020

Module
macr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:macr00020]
macr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:macr00020]
macr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:macr00020]
macr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:macr00020]
macr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:macr00020]
Other DBs
GO: 0006099
Organism
Macrococcus sp. IME1552 [GN:macr]
Gene
BHM04_02055  citrate synthase [KO:K01659] [EC:2.3.3.5]
BHM04_04325  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BHM04_02060  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BHM04_03805  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BHM04_03810  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BHM04_08495  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BHM04_05905  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BHM04_04705  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BHM04_04700  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BHM04_05025  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BHM04_05030  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BHM04_02325  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BHM04_02330  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BHM04_02320  succinate dehydrogenase [KO:K00241]
BHM04_00975  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BHM04_02065  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BHM04_07720  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BHM04_08045  malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
BHM04_05820  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BHM04_01270  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BHM04_05920  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BHM04_05915  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
BHM04_08480  hypothetical protein [KO:K00627] [EC:2.3.1.12]
BHM04_05910  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
macr00010  Glycolysis / Gluconeogenesis
macr00061  Fatty acid biosynthesis
macr00071  Fatty acid degradation
macr00190  Oxidative phosphorylation
macr00220  Arginine biosynthesis
macr00250  Alanine, aspartate and glutamate metabolism
macr00280  Valine, leucine and isoleucine degradation
macr00350  Tyrosine metabolism
macr00470  D-Amino acid metabolism
macr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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