KEGG   PATHWAY: magx00630
Entry
magx00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Magnetospirillum sp. XM-1
Class
Metabolism; Carbohydrate metabolism
Pathway map
magx00630  Glyoxylate and dicarboxylate metabolism
magx00630

Module
magx_M00621  Glycine cleavage system [PATH:magx00630]
magx_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:magx00630]
Other DBs
GO: 0046487 0043648
Organism
Magnetospirillum sp. XM-1 [GN:magx]
Gene
XM1_2053  acsA; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
XM1_1543  Putative Acyl-coenzyme A synthetase/AMP-(Fatty) acid ligase(AMP-dependent synthetase/ligase,58-466) [KO:K01895] [EC:6.2.1.1]
XM1_0417  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
XM1_3790  glcB; malate synthase G (fragment) [KO:K01638] [EC:2.3.3.9]
XM1_1392  mdh; Malate dehydrogenase(Malate dehydrogenase, type 3,3-313) [KO:K00024] [EC:1.1.1.37]
XM1_3651  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
XM1_2564  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
XM1_0549  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
XM1_4431  phbA; Acetyl-CoA acetyltransferase phbA [KO:K00626] [EC:2.3.1.9]
XM1_1679  atoB; acetyl-CoA acetyltransferase(Thiolase,4-394) [KO:K00626] [EC:2.3.1.9]
XM1_2487  putative Beta-oxoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
XM1_4430  phbB; Acetoacetyl-CoA reductase phbB [KO:K00023] [EC:1.1.1.36]
XM1_4442  phaJ; (R)-specific enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
XM1_1237  ccr; Crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
XM1_3385  Methylmalonyl-CoA/ethylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
XM1_1238  Protein MeaA;  [KO:K14447] [EC:5.4.99.63]
XM1_1236  mmgC; Acyl-CoA dehydrogenase（Acyl-CoA dehydrogenase/oxidase,151-412；Acyl-CoA dehydrogenase/oxidase C-terminal,393-549） [KO:K14448] [EC:1.3.8.12]
XM1_1405  Putative Dehydratase [KO:K14449] [EC:4.2.1.148]
XM1_1373  Putative Citrate lyase beta subunit(Pyruvate/Phosphoenolpyruvate kinase,25-288) [KO:K08691] [EC:4.1.3.24 4.1.3.25]
XM1_0379  Pcca; propionyl-CoA carboxylase alpha chain, biotin-carrying subunit [KO:K01965] [EC:6.4.1.3]
XM1_0378  putative propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
XM1_0381  mutB; adenosylcobalamin-dependent methylmalonyl-CoA mutase large subunit [KO:K01847] [EC:5.4.99.2]
XM1_2482  yliK; methylmalonyl-CoA mutase (fragment of part 1) [KO:K01849] [EC:5.4.99.2]
XM1_2481  yliK; methylmalonyl-CoA mutase (fragment of part 2) [KO:K01848] [EC:5.4.99.2]
XM1_1172  gyaR; Glyoxylate reductase(NAD(P)-binding domain,5-118;NAD(P)-binding domain,119-291) [KO:K00015] [EC:1.1.1.26]
XM1_2122  putative Phosphatase [KO:K01091] [EC:3.1.3.18]
XM1_1905  cbbZ; Phosphoglycolate phosphatase（2-phosphoglycolate phosphatase, prokaryotic,8-218） [KO:K01091] [EC:3.1.3.18]
XM1_3154  putative Phosphatases [KO:K01091] [EC:3.1.3.18]
XM1_3514  cbbM; Ribulose bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
XM1_0741  agxt; Serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
XM1_3161  putative aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
XM1_3323  gltB; glutamate synthase, large subunit [KO:K00284] [EC:1.4.7.1]
XM1_4706  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
XM1_3121  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
XM1_4476  gcvPA; glycine dehydrogenase (decarboxylating) subunit 1 gcvPA [KO:K00282] [EC:1.4.4.2]
XM1_4475  gcvPB; glycine dehydrogenase (decarboxylating) subunit 2 gcvPB [KO:K00283] [EC:1.4.4.2]
XM1_4478  gcvT; glycine cleavage system T-protein gcvT [KO:K00605] [EC:2.1.2.10]
XM1_1387  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes(Dihydrolipoamide dehydrogenase,1-468) [KO:K00382] [EC:1.8.1.4]
XM1_3332  lpdV; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
XM1_4477  gcvH; glycine cleavage complex lipoylprotein gcvH [KO:K02437]
XM1_3109  hydroxypyruvate reductase; glycerate kinase [KO:K11529] [EC:2.7.1.165]
XM1_3487  fdh3A; formate dehydrogenase alpha subunit precursor (tat pathway signal) [KO:K00123] [EC:1.17.1.9]
XM1_1065  Formate dehydrogenase subunit alpha(Molybdopterin oxidoreductase;  [KO:K00123] [EC:1.17.1.9]
XM1_1064  NADH:ubiquinone oxidoreductase(Thioredoxin-like fold;  [KO:K22515] [EC:1.17.1.9]
XM1_3488  fdhB; Formate dehydrogenase iron-sulfur subunit [KO:K00124]
XM1_3490  fdnI1; formate dehydrogenase, gamma subunit [KO:K00127]
XM1_1703  purU; formyltetrahydrofolate hydrolase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
magx00010  Glycolysis / Gluconeogenesis
magx00020  Citrate cycle (TCA cycle)
magx00030  Pentose phosphate pathway
magx00053  Ascorbate and aldarate metabolism
magx00071  Fatty acid degradation
magx00230  Purine metabolism
magx00250  Alanine, aspartate and glutamate metabolism
magx00260  Glycine, serine and threonine metabolism
magx00620  Pyruvate metabolism
magx00710  Carbon fixation by Calvin cycle
magx00750  Vitamin B6 metabolism
magx00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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