KEGG   PATHWAY: mau00020
Entry
mau00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Micromonospora aurantiaca
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mau00020  Citrate cycle (TCA cycle)
mau00020

Module
mau_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mau00020]
mau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mau00020]
mau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mau00020]
mau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mau00020]
mau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mau00020]
Other DBs
GO: 0006099
Organism
Micromonospora aurantiaca [GN:mau]
Gene
Micau_0515  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Micau_2847  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Micau_4271  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Micau_5381  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Micau_5222  2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Micau_4602  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Micau_0652  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Micau_0651  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Micau_5397  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Micau_5398  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Micau_5334  Succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
Micau_2153  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Micau_5335  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Micau_2152  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Micau_2154  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Micau_5816  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Micau_5814  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Micau_5383  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Micau_0854  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Micau_4703  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Micau_1271  Transketolase domain-containing protein [KO:K00163] [EC:1.2.4.1]
Micau_4603  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mau00010  Glycolysis / Gluconeogenesis
mau00053  Ascorbate and aldarate metabolism
mau00061  Fatty acid biosynthesis
mau00071  Fatty acid degradation
mau00190  Oxidative phosphorylation
mau00220  Arginine biosynthesis
mau00250  Alanine, aspartate and glutamate metabolism
mau00280  Valine, leucine and isoleucine degradation
mau00350  Tyrosine metabolism
mau00470  D-Amino acid metabolism
mau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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