KEGG   PATHWAY: mbrd00020
Entry
mbrd00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium branderi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbrd00020  Citrate cycle (TCA cycle)
mbrd00020

Module
mbrd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mbrd00020]
mbrd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbrd00020]
mbrd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbrd00020]
mbrd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbrd00020]
mbrd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbrd00020]
Other DBs
GO: 0006099
Organism
Mycobacterium branderi [GN:mbrd]
Gene
MBRA_24580  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MBRA_24600  gltA2; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MBRA_27790  gltA1; citrate synthase [KO:K01659] [EC:2.3.3.5]
MBRA_42380  acn; aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MBRA_04630  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MBRA_04640  icd2_1; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MBRA_25070  icd2_2; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MBRA_30290  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MBRA_09420  lpdC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MBRA_33500  2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MBRA_33510  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MBRA_25520  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MBRA_25510  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MBRA_04390  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MBRA_12220  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MBRA_04400  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MBRA_12230  fumarate reductase [KO:K00240] [EC:1.3.5.1]
MBRA_04370  putative succinate dehydrogenase (cytochrome b-556 subunit) SdhC [KO:K00241]
MBRA_04380  sdhD; succinate dehydrogenase [KO:K00242]
MBRA_27320  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MBRA_30250  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MBRA_46550  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MBRA_48170  pca; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MBRA_13160  pckG_1; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MBRA_25060  pckG_2; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MBRA_35660  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MBRA_29280  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MBRA_29270  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MBRA_36060  dlaT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MBRA_29260  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbrd00010  Glycolysis / Gluconeogenesis
mbrd00053  Ascorbate and aldarate metabolism
mbrd00061  Fatty acid biosynthesis
mbrd00071  Fatty acid degradation
mbrd00190  Oxidative phosphorylation
mbrd00220  Arginine biosynthesis
mbrd00250  Alanine, aspartate and glutamate metabolism
mbrd00280  Valine, leucine and isoleucine degradation
mbrd00350  Tyrosine metabolism
mbrd00470  D-Amino acid metabolism
mbrd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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